Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1302 161 1e-34 >seq1302 Length=29391 Score = 161 bits (178), Expect = 1e-34 Identities = 373/559 (67%), Gaps = 5/559 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| || || | ||| || || || || || | ||| ||| ||| || | Sbjct 20799 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 20858 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || || || |||| || || Sbjct 20859 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 20918 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || || || || || || | ||| | |||||| | | ||| | || Sbjct 20919 GATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTA-TCCT 20977 Query 93271 -GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||| | ||||| ||||| || || || || || | || || || |||| Sbjct 20978 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 21037 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 |||| ||||| ||||| | | | || ||||| || || || | ||| || || Sbjct 21038 TAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGG 21097 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || || |||| |||||||| || ||||| |||||||| || | ||| || | || Sbjct 21098 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGA 21157 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| || || | |||| ||| ||||| || || ||||| |||||||| || || | Sbjct 21158 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAG 21217 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCC 93566 | || ||||| | || || | || | |||||| | | | | || | || Sbjct 21218 CGAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCC 21277 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| ||||| || |||||||| | || || ||||||| || || || || || | Sbjct 21278 AGTCGTGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCT 21337 Query 93627 TTTTGTACATATCCCATAT 93645 | |||||||| | ||| || Sbjct 21338 TCTTGTACATTTGCCAAAT 21356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851263758800