Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1302 140 7e-28 seq927 116 8e-21 seq768 102 2e-16 seq614 102 2e-16 >seq1302 Length=29391 Score = 140 bits (154), Expect = 7e-28 Identities = 386/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 20533 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 20592 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 20593 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 20652 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 20653 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 20712 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 20713 AACTCCTGCTCAATGGTGACAGCGTCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 20772 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 20773 CGAC-CCTTG------AGGTGGGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 20825 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 20826 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 20885 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 20886 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 20945 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 20946 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 21005 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | ||| || || || || || | |||||| || | |||| ||| || Sbjct 21006 CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTC 21065 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 21066 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 21111 >seq927 Length=143536 Score = 116 bits (128), Expect = 8e-21 Identities = 452/698 (65%), Gaps = 13/698 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | || || || | | || Sbjct 93611 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 93553 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| ||||| |||| ||||||||||| | | | ||| || |||| Sbjct 93552 AGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 93493 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292 | || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 93492 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 93434 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || || | | ||||||||| ||||||||||||||||| || Sbjct 93433 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 93374 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| ||||| || ||| ||| ||| ||| || |||||| | Sbjct 93373 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 93314 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469 ||| || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 93313 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 93254 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527 | | ||| | |||||| |||||| ||| || || | || ||| | | Sbjct 93253 TCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGA 93196 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | |||||||| ||| || || || | ||||||| || ||| || | ||| | Sbjct 93195 ACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAATAGGGACCCTCCTCCT 93136 Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 || |||| ||| || || | ||||| ||||||| ||||||||||| | Sbjct 93135 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTG 93077 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 ||||||| ||||||| | || || || ||||| ||| | ||| |||| Sbjct 93076 TTGAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCA 93017 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 || ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | Sbjct 93016 AGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG 92957 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 || | || ||||||| ||| || ||| |||||| Sbjct 92956 ACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 92919 >seq768 Length=19994 Score = 102 bits (112), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || || Sbjct 3604 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAT 3663 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 3664 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 3723 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 3724 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 3782 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| | |||||| Sbjct 3783 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCC 3825 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 4411 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 4470 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 4471 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 4530 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| ||||| || |||| |||| Sbjct 4531 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 4590 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 4591 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 4649 >seq614 Length=49638 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 |||| |||||||| ||||||| ||||||||| || | | |||| |||||| | || Sbjct 20819 CGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 20760 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 |||||| |||| | ||||||| | | || |||| ||||| || || ||| ||| Sbjct 20759 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGGTATGTCTCTGAGCAGACTGCCTA 20700 Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 |||||||||||| ||| ||| || | || | ||| |||| ||| ||| || || Sbjct 20699 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATTGGCCTGGCCCAGAACTTCGTCGG 20640 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||||| |||| ||| |||| || | || |||||||| || Sbjct 20639 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 20589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027818758252170