Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq504 170 4e-37
seq606 168 1e-36
seq737 147 4e-30
seq768 102 2e-16
seq624 86.0 1e-11
>seq504
Length=275141
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || |||||||| || |||||||| || |||
Sbjct 23314 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 23255
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || ||||| || ||
Sbjct 23254 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 23195
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 23194 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 23135
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 23134 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 23088
>seq606
Length=53999
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || |||||||| || || ||||| ||||| |||
Sbjct 5816 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 5757
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | | ||| |||||||| |||
Sbjct 5756 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 5697
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| ||||| ||||| | || || ||
Sbjct 5696 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 5637
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||| || || || | |||||||||||| |||||||| |||
Sbjct 5636 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 5586
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || || || || || || ||||| || |||||
Sbjct 6326 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 6267
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| || ||||| ||||||| ||||| ||||| |||
Sbjct 6266 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 6207
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||| || || ||||| || | ||| || |||
Sbjct 6206 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 6147
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| || ||||| ||||| ||||||||||||||||| || |||||
Sbjct 6146 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 6100
Score = 120 bits (132), Expect = 6e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || || || || || || ||||| || ||||
Sbjct 6098 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 6039
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| || || || || || | || ||||| || ||
Sbjct 6038 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 5979
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||||| ||| || |||||||| || | || || ||
Sbjct 5978 ATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 5919
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| | |||||||| || || |||||||||||||||| |||
Sbjct 5918 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 5878
>seq737
Length=34572
Score = 147 bits (162), Expect = 4e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| || ||||| ||
Sbjct 19551 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 19610
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| |||||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 19611 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 19670
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| |||||||| |||||
Sbjct 19671 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 19729
>seq768
Length=19994
Score = 102 bits (112), Expect = 2e-16
Identities = 438/677 (65%), Gaps = 39/677 (6%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || ||| |||| || ||||| || || || ||||||
Sbjct 4613 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 4554
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099
||||| | ||| || || || ||||| |||| | | ||| |||| ||
Sbjct 4553 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 4494
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| || ||||| || ||||| || |||| |||||| ||||| ||||| || ||
Sbjct 4493 ATGAG-CTCACCAGTGAGCACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 4435
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214
||| |||| ||||| || | ||| || | || || |||| | | |
Sbjct 4434 GACGGCAATACGGGAGCCCAGAGAGCACTGGAAGGAGATGTCCTGGATCTGAGGCTTAGA 4375
Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267
|| |||| |||| |||| || | |||| || ||||| | |
Sbjct 4374 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGC 4324
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||| ||||| ||| || | | ||
Sbjct 4323 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAAGTGAACTCCATCTCGGACTC 4264
Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
|| ||||||||||| |||| |||| || || ||||| |||| ||||||
Sbjct 4263 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 4207
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| || | ||||||||| | |||||| || || || ||| | ||| ||
Sbjct 4206 ACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGT 4151
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502
||| ||||||||||||||||| || || ||||| || | || | | | | ||
Sbjct 4150 TGTCGAGGAAGCCAGAGTCGTGAGAGACGATGATAGAAGTGCAAG---GGGA-GTTGATG 4095
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| | |||||| ||||| | || |||| ||||| ||||| ||||| |||
Sbjct 4094 AGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGA 4035
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
||||| || || | | | || || ||| || |||| |||||||| ||||| ||
Sbjct 4034 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 3975
Query 225623 CCGGACAGGGAGCCGAT 225639
|| || |||| || |||
Sbjct 3974 CCAGAAAGGGCGCTGAT 3958
>seq624
Length=26123
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | ||||||||| |||||| | |||| ||| |||||| || | | |
Sbjct 7053 TAACGCCACTGAAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCTAGA 6994
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | || | || || | |||||| |||||| || || ||
Sbjct 6993 GCGTGCTGCTTGATATAACCAATACGAAGGTTGGGGTGCTTCTCAACCTTTCCGGTGGTA 6934
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | ||||||||| |||| |||||| || || | |||||| ||||| |||||||||
Sbjct 6933 GGGATAGTCTCGCCGGTAAGGAGCTTGATAAGAGTCGACTTGCCAGCACCGTTGGGGCCA 6874
Query 225158 AT 225159
||
Sbjct 6873 AT 6872
Score = 84.2 bits (92), Expect = 4e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502
||| ||||| || |||||||| || ||||||| ||| | | || | | ||||
Sbjct 6583 GTCCAGGAATCCGGAGTCGTGAGAAACAATGA--GACTGGTGATGTCGGGATGAGACTTG 6526
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| | |||||| || | |||| || || | ||||| |||||||||||||||
Sbjct 6525 AGGTAGTTCTCGAGCCAAGCGATGTTGGCAACATCAAGATGGTTAGTAGGTTCGTCCAGA 6466
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
|| || | ||||||| ||| || || || | |||| ||||||||| ||||| ||
Sbjct 6465 AGGAGAACGTCAGCACGCTGGAGCATAGCTCGGGCCAGAGCCAGCTTCATCTTCCAACCT 6406
Query 225623 CCGGACAGGGAGCC 225636
|| || ||||| ||
Sbjct 6405 CCAGAAAGGGAACC 6392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921606617216400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |