Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1302 116 8e-21 seq768 98.7 2e-15 >seq1302 Length=29391 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| |||| || ||| | |||||||||||||| |||||| |||||||| || Sbjct 20705 GAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAG 20646 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| || || || | | |||||||||| | ||||| || ||||| ||| ||| Sbjct 20645 TTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAAC 20586 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 ||||| | ||| |||||| ||| || ||| || || || ||||||||||| |||||| Sbjct 20585 CCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGT 20526 Query 243724 GT 243725 || Sbjct 20525 GT 20524 >seq768 Length=19994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 174/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||||| ||| || ||||| || ||| | |||| | Sbjct 3853 AGTCAATGGTGGTCATCTCAGTATCGGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 3794 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| ||| ||| |||| || |||||||| ||| Sbjct 3793 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGA 3735 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || | |||||||| ||| | Sbjct 3734 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 3675 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | || |||||||| || |||| || || ||||| || ||| | || Sbjct 3674 AGGTGAGTCTGATTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 3615 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 3614 AGATCCTCACC 3604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102860641009500