Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq606 154 3e-32 seq504 143 6e-29 seq737 138 3e-27 >seq606 Length=53999 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||||||||| || ||||| |||||||| | ||||| | || || || Sbjct 5799 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 5740 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | ||||| ||||| || |||||||| || ||||| || Sbjct 5739 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 5680 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || || || ||||| ||| || || || ||||| | ||||| Sbjct 5679 AATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 5620 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 5619 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 5590 Score = 134 bits (148), Expect = 3e-26 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 |||| | ||| ||||||||||| ||||| || || || ||||| ||| |||| || | Sbjct 6545 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCG 6487 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||||||| ||||||||||| || ||||| || || ||||| || || Sbjct 6486 ACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTC 6427 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGG 195099 ||||| ||||| || ||| ||||| || || |||| | | || || || |||||| Sbjct 6426 CTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGAC--TCGACCTCAAGG 6369 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || | ||| || || || | ||||| Sbjct 6368 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 6328 >seq504 Length=275141 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | ||||| ||| Sbjct 23296 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 23237 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 23236 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 23177 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | |||||| Sbjct 23176 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 23117 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 23116 CCCGTGAGGGTCTTGACGAAAATCTGCAT 23088 >seq737 Length=34572 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 19551 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 19610 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| |||||||| || |||||||| || ||||| || || || |||||| || || Sbjct 19611 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 19670 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 19671 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 19729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109462125130790