Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq606 98.7 6e-16
seq504 89.7 3e-13
>seq606
Length=53999
Score = 98.7 bits (108), Expect = 6e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
|| ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || ||
Sbjct 6518 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 6460
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || || || || | || | ||||||||||| |||||| || |||
Sbjct 6459 GATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 6400
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | |||| || ||| || || | ||| ||||| ||||| ||||||||||||||
Sbjct 6399 GTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCAC 6340
Query 34970 AAAGATCTGCATA 34982
||| |||||||||
Sbjct 6339 AAAAATCTGCATA 6327
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| ||| || ||||||||||| || || || || | || | || ||
Sbjct 5799 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 5740
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || ||||| || || | ||||||||||| | || | |||||||||||
Sbjct 5739 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 5680
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
|||||| ||||| || | ||||| || | |||||| |||| ||| ||||
Sbjct 5679 AATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGG 5624
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || | ||||| || |||||||||||
Sbjct 5623 TCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 5590
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/216 (69%), Gaps = 10/216 (5%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | || ||| ||||||||||| ||||| ||||| |||| |||| ||
Sbjct 6309 AACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTC 6250
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || || || || || || ||||| || || || | || | |||||||||||
Sbjct 6249 AAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTG 6190
Query 34892 AATCTT-CTGTT----TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||||| || || | | ||| ||||| | | ||| || || | || |||
Sbjct 6189 GATCTTGCTCTTCACATTATCAATGGTATCGGAT-----GACTCGACTTCCAGAGTAATG 6135
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| ||||| || ||||| ||||||
Sbjct 6134 GTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 6099
>seq504
Length=275141
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| ||| | ||| |||| ||
Sbjct 23296 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 23237
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || ||||| |||||||| | || | |||||||||||
Sbjct 23236 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 23177
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | ||| || || ||
Sbjct 23176 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 23117
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||||||| ||||| || || |||||||| ||
Sbjct 23116 CCCGTGAGGGTCTTGACGAAAATCTGCATCTT 23085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324628179633360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |