Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq753 96.9 3e-14 seq606 96.9 3e-14 seq1277 91.5 1e-12 seq748 87.8 1e-11 >seq753 Length=85189 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || || || ||||||||||| || |||||||| | || Sbjct 51296 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 51355 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || ||||| || || ||||| || ||||||||||| || |||| || || Sbjct 51356 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 51415 Query 550529 CTTGATAA 550536 |||||||| Sbjct 51416 CTTGATAA 51423 >seq606 Length=53999 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | || || ||| ||| || ||| ||||| || | ||||||| Sbjct 6317 AGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGG 6258 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| || || || || || |||| || ||||| |||||||| || || Sbjct 6257 CCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCC 6198 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || || || || || ||||| ||||| | ||| | | ||| ||||| Sbjct 6197 TTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATC-GGATGACTCGACTTCCAGAGT 6139 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||| || || || ||||| ||||||||| Sbjct 6138 AATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 6099 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 6090 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 6031 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| ||||| ||||| ||||| || || | ||||| |||||||| || || || Sbjct 6030 GCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTC 5971 Query 563376 TTTATCTTGAATTTTT 563391 || || ||||| ||| Sbjct 5970 CTTGTCCTGAATCTTT 5955 >seq1277 Length=29474 Score = 91.5 bits (100), Expect = 1e-12 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| | Sbjct 18872 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 18931 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | | Sbjct 18932 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 18991 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || ||||| || || || || | || ||| | | ||| || || || || || Sbjct 18992 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 19044 >seq748 Length=198777 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960 ||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | | Sbjct 85559 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 85618 Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011 ||||||| || ||||| | |||||||||||||| | ||| |||| ||| Sbjct 85619 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTGGGAGTGAGACCA 85669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029223548221300