Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq927 340 3e-88
seq1302 196 9e-45
>seq927
Length=143536
Score = 340 bits (376), Expect = 3e-88
Identities = 1152/1767 (65%), Gaps = 102/1767 (6%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | ||| |||||||||||| || || || ||||||||||| |||||
Sbjct 93748 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTG 93689
Query 212613 AGGCC---CTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668
||||| ||| |||||| |||| |||||| |||| |||| | || |
Sbjct 93688 AGGCCAAGCTT---CCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 93639
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
|||| | | |||| | |||||| ||||| ||| || ||||| | |
Sbjct 93638 GGGGTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACC 93588
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| ||||| ||||| | | || | | ||| |||| |||||| |||||||| | |
Sbjct 93587 TCGATCAGCAGCCATCTGAACGACCTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAG 93528
Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848
| |||| || | |||| | ||| |||||||| | || || || ||||
Sbjct 93527 AGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 93475
Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900
| || | ||| ||| | ||| ||| || ||| || | ||| ||||| |
Sbjct 93474 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 93416
Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960
|| |||||||| | |||||| ||||| | ||| || | | ||||| | ||| ||
Sbjct 93415 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAG 93356
Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020
||||||||||||| || ||||||||| ||||||||||| | || ||||| || |||||
Sbjct 93355 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 93296
Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076
||||| | || |||||||| | | ||||| | | ||| | ||||| ||
Sbjct 93295 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 93239
Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136
| |||||||||| | |||| | ||| |||||||||||||| ||||| |
Sbjct 93238 T-CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAG 93189
Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192
||| || |||| ||||| || | | | | ||| ||||| || | |||||| |
Sbjct 93188 GATACC----CTCAGAGGCGGGGGAACCTTTGAAGGTGGAATAGGGACCCTCCTCCTTAG 93133
Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251
|||||| ||| ||| || |||||||||| ||| ||||| || || |||| | |||||
Sbjct 93132 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 93074
Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311
|||| ||||| || ||| ||||||||| || |||| |||| || ||
Sbjct 93073 AGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGG 93014
Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370
||||| || || | || ||||||| ||| | || |||| ||| |||| ||||| |
Sbjct 93013 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 92955
Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430
||||| ||| |||||||||||||| |||||||| | || | |||| |
Sbjct 92954 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCTT 92895
Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAG 213484
| || || | ||||| |||||| | ||| | | || |||||
Sbjct 92894 GTGCA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAG 92841
Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544
|| | ||| |||||||| || || ||||| | || | | |||||| || || ||
Sbjct 92840 AGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTC 92781
Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604
|||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | ||
Sbjct 92780 AGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGC 92722
Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663
| | |||||||||||||||| | ||| |||||||| ||||| | | || || |
Sbjct 92721 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 92662
Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723
||| || | | ||||||| | | ||| | | | | |||||||| ||
Sbjct 92661 ACCAAAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTT 92605
Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783
|||| || | | ||| || | || || | | || || || || ||| |
Sbjct 92604 CGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 92545
Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843
|||| || ||||||| |||| | | || | || |||||| || || |||| ||| |
Sbjct 92544 ACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 92485
Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903
| ||| ||| ||||| | || | ||| || || ||| || || ||||| |
Sbjct 92484 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 92425
Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960
| || || |||| || | |||||| ||||| | |||||||||||| || || | ||
Sbjct 92424 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 92365
Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGT 214016
| ||||| |||||||| | | | || | || ||||||||| || || | ||
Sbjct 92364 TGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGA 92309
Query 214017 ACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGG 214073
|| | ||||| || ||| |||||||| || || || || ||||| | || | | |
Sbjct 92308 ACAACACCGTTCGA-TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 92250
Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133
||| | | ||| || || ||||| || ||||||||||||||| ||| | | | |
Sbjct 92249 GTGCACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGA 92192
Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193
|| || ||| || | || ||||| || | | | | ||||||||| || |
Sbjct 92191 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 92132
Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253
|||||| | | ||| | |||||| |||||||| ||||| | | || ||| |
Sbjct 92131 TGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTG 92072
Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACT 214280
|| | || |||| ||||||| ||||
Sbjct 92071 GACATCAGGTTGTATGTCTCCAAGACT 92045
>seq1302
Length=29391
Score = 196 bits (216), Expect = 9e-45
Identities = 490/737 (66%), Gaps = 27/737 (4%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | ||||| |||||||| ||||| || | | |||||||||||
Sbjct 20511 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 20570
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
||||||| ||||||||||| | || || ||| | || ||| | | | || |
Sbjct 20571 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCT-TCTCGTTGCCAAGCGCGACAAGGA 20629
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| |||| |||||| |||| ||||| | ||||||| ||||||||| | ||||
Sbjct 20630 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 20689
Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| || || ||||| ||||| ||||||| ||| || || || || | ||
Sbjct 20690 -CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACAGCGTCAGTAATGATA 20748
Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTG------CGCAGGTGCTTGGCATAGAGCAT 48129
| || || | |||| ||| || | | | | | || | ||| |
Sbjct 20749 TCCT------GGATCATCTGC----TTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAG 20798
Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189
|||||||||||| |||| | || || || || ||||||| ||||||||||| ||
Sbjct 20799 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 20858
Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249
||| ||||||| || | || ||||||||||| || | ||||| | ||| ||||||
Sbjct 20859 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 20918
Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309
||| ||||| || || ||||| || ||| | || | || || | || ||| ||
Sbjct 20919 GATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG 20978
Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369
|||||| | |||||||| |||||||| |||||| || || ||||| |||||
Sbjct 20979 GATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 21038
Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426
||||| | | | || | | ||| | ||||| | ||||||| | |||
Sbjct 21039 AAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAGTA 21095
Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486
|||| ||||| | ||||| || ||||||||| ||||||||| | |||||
Sbjct 21096 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGG 21155
Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546
| ||| || || ||||| ||| | || ||||| ||||| || ||||| || ||
Sbjct 21156 GATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGC 21215
Query 48547 AGCAAAGAAGGCAAGGA 48563
||| ||||| |||||||
Sbjct 21216 AGCGAAGAAAGCAAGGA 21232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931516847500800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |