Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1001 122 1e-22 >seq1001 Length=205063 Score = 122 bits (134), Expect = 1e-22 Identities = 338/513 (66%), Gaps = 9/513 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | ||||| || || || ||||| || || || || ||||||||||| ||||| || Sbjct 50606 ACAGCGATAGGGCCAACACCGGGACCACCGCCGCCGTGGGGAATACAGAAGGTCTTGTGG 50665 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| |||||| ||||| || | || || | ||| || Sbjct 50666 AGGTTGAGATGGCAGACATCAGCACCAATGTCACCGGGGCTGCAAAGGCCGATCTGGGCG 50725 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || |||| |||| || || || | | ||| | Sbjct 50726 TTCATGTTGGCACCGTCCATGTAGACGAGACCGCCATGCTCGTGGACAAGATCACAGACT 50785 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 || |||| | | || || ||||| ||| || ||||| |||| ||| ||| | Sbjct 50786 TGCTTGATCTCAGGCTCGAAGACACCGAAAGTAGAGGGATAGGTAACCATGATAGCAGCA 50845 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA--- 138479 || ||| | | | ||| || || ||||| | ||| || | ||| ||| Sbjct 50846 AGCTCATCAGCGTGCTTGACACACTTGGCCTTCAGATCCTCGATATCCAGGTTACCAGTC 50905 Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | | | |||||||||||| ||||| ||||| || |||||| | ||| |||||| || Sbjct 50906 TTACCGTCACACTTGACAGTAACAACCTTCATACCAGCCATGGCAGCAGAAGCAGGGTTG 50965 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || || || || || | || || || || || |||| ||||| | || || ||| | Sbjct 50966 GTACCGTGAGCCGAAACAGGGATAAGGCAGACCTTTCGCTTATCTCCATCACGAGCCTCG 51025 Query 138599 ATGATATGCTTGGAT--TGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGT 138656 || || || | ||| || | || || ||| |||||||||||| || | ||| || Sbjct 51026 -TGGTAAGCCTTGATACAGCGA--AGACCAGCAAACTCACCCTGTGCACCAGAGTTGGGC 51082 Query 138657 TGTAATGATATAGAATCAAAACCTGTGATATCA 138689 || | | ||| || | ||| ||||| ||| Sbjct 51083 TGAAGAGTGGTAGCGTCCATACCAGTGATCTCA 51115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578988484652400