Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq927 183 9e-41
seq1302 149 2e-30
seq596 111 5e-19
seq748 93.3 1e-13
>seq927
Length=143536
Score = 183 bits (202), Expect = 9e-41
Identities = 574/880 (65%), Gaps = 17/880 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | ||| ||| ||||||||| || || |||||| || | ||||| |||||
Sbjct 92795 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 92736
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| ||
Sbjct 92735 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 92676
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | | || || || |||| |||| |||
Sbjct 92675 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 92616
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || |||| || | ||| | | | ||||| ||||| || || || ||||||
Sbjct 92615 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 92558
Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924
|||| | |||||| | ||||| ||| | || || | | |||||| ||| ||
Sbjct 92557 CACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATGAAA 92501
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984
| |||| ||||| || ||||||||| | || |||||| | |||||
Sbjct 92500 AGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGG 92441
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || | ||||| || ||||| || || || |||
Sbjct 92440 TTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 92381
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
||| ||| | |||| |||||||| || ||||| |||||||| || |||||||||
Sbjct 92380 AAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 92321
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161
| |||||||||| || ||| || || || || ||||| ||| || | || ||||
Sbjct 92320 CGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTA 92261
Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220
| || | | || | | || ||||||||||| | |||| || || || || ||
Sbjct 92260 GCACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACA 92202
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279
||| | ||||| | | || || |||||| || || | ||| | | ||| |||
Sbjct 92201 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 92143
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || ||||| || | || || || |||||||| || || || | ||||| | |
Sbjct 92142 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGA 92083
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399
| | || | ||||| | |||||||||| | ||| | || | || ||
Sbjct 92082 AGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAA 92023
Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459
||| | ||| || | ||| ||| |||||||| ||||| |||||| || |||||
Sbjct 92022 TACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT 91963
Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| || |||| ||| || || || || ||
Sbjct 91962 TGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 91923
>seq1302
Length=29391
Score = 149 bits (164), Expect = 2e-30
Identities = 422/644 (66%), Gaps = 6/644 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || ||| ||| || || | ||||| |||||| || ||||| || || |
Sbjct 21154 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 21095
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424
| || || ||||| || |||||||| || ||| |||| | | || || ||||
Sbjct 21094 ACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTTAACG 21035
Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483
||||| | || |||| || || |||||| | |||||||| || ||||||||||
Sbjct 21034 CCATT-GAGACCATTCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAG 20976
Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543
|| ||| | ||||| ||||||||||| || |||| || ||||| || ||
Sbjct 20975 GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTC 20916
Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603
||||||||||| ||| |||||| || ||||| || ||||||||| | | || || |||
Sbjct 20915 TTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTG 20856
Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663
|| || ||||| || || || | || |||| |||||||| || |||||| |
Sbjct 20855 ACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTC 20796
Query 133664 CTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAA 133723
|| ||||| | | || | | || ||| | | ||| | || || |||| ||
Sbjct 20795 CTCCACTCCCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGATATCATTACTGAC 20736
Query 133724 GCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGCCGTTTAATTGGTA 133781
|| || |||||| || || ||| | ||||| || ||||| || | || |
Sbjct 20735 GCTGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTT--CTCGGCA 20678
Query 133782 TGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGT 133841
|||| || || ||| ||| || ||||| || || ||||| | | || |
Sbjct 20677 TGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGC 20618
Query 133842 TAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCA 133901
| || || ||| ||||| || |||| || ||||||| ||||||| ||| |
Sbjct 20617 TTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCC 20558
Query 133902 TTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
||| ||||| || ||||||||| | | || ||||| |||
Sbjct 20557 TTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 20514
>seq596
Length=165388
Score = 111 bits (122), Expect = 5e-19
Identities = 392/600 (65%), Gaps = 38/600 (6%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | || || ||||| | | ||||||| || | ||| | || ||
Sbjct 9101 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 9042
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | |||||||||||||| |||||||| |||||
Sbjct 9041 TCCTTCAGGAAAGCAGCGGCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 8982
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584
|| ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | |
Sbjct 8981 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 8924
Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|||| | ||||| || ||| || | ||||| || ||||||||||||
Sbjct 8923 GACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 8868
Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696
| | || |||| ||| | || || | || || | |||||| || |||| ||
Sbjct 8867 TAGGTAGGTCCGAAGAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCGTTGTA 8812
Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755
||| || ||| || ||||| ||||| | ||| ||| |||| | ||
Sbjct 8811 CATGACCTCGAAACCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 8757
Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809
|||| || | || | | || ||| |||| || | | ||| | |
Sbjct 8756 GAATC--GACTGTGACATCAGTGAACGGTGTGGCGTCACCCTCCATACCTTCCAGCGTTG 8699
Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869
| || |||| | ||| ||| ||| ||||| || ||||| || ||||| || |
Sbjct 8698 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGATGGAATGGCGT 8639
Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929
| || ||||||||||| ||||| | || || || |||| |||||||||| | |
Sbjct 8638 GAGGGTTGATGATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 8580
Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || |||| || || || |||||||| |||||||||||| ||||| ||||||||
Sbjct 8579 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 8521
>seq748
Length=198777
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||||| ||||||||
Sbjct 84770 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 84826
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | ||||||| |||||||||||| || || || |
Sbjct 84827 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 84886
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 84887 ACACCAACCATTTCACCAGG 84906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471791765001690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |