Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq606 102 7e-17 >seq606 Length=53999 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||| || ||||| || | || Sbjct 6100 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 6159 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || |||||||||||| Sbjct 6160 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 6219 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || || || || ||| ||| | || || || ||| Sbjct 6220 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 6279 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || |||||||| Sbjct 6280 ATTCAGAAGGAATCTACTCTCCACTTGGT 6308 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || ||||| || || | || Sbjct 5590 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 5649 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || ||||| || Sbjct 5650 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 5709 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| || ||||| || ||||| ||||| | | | || ||||| ||| Sbjct 5710 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 5769 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || || ||| Sbjct 5770 ATTCAGAAGGAGTCCACTCTTCAC 5793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889895503600