Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq927 196 6e-45
seq1302 194 2e-44
seq614 84.2 3e-11
>seq927
Length=143536
Score = 196 bits (216), Expect = 6e-45
Identities = 1165/1842 (63%), Gaps = 43/1842 (2%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
|||||||||| || || |||| || || ||||||||||| || |||||||| |
Sbjct 93744 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 93685
Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923
| |||||||| | | || | ||||| || | |||| | || || | ||||
Sbjct 93684 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 93626
Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983
|| ||||| ||||| ||||| |||||| || ||||| || ||||| | ||
Sbjct 93625 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 93566
Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043
|| | | ||| ||||| || ||| | || || ||| | ||| | |||||
Sbjct 93565 ACCTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 93506
Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103
| || || || ||||| ||| | | | ||| | | ||||||| | | |||
Sbjct 93505 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 93446
Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163
|| ||||| || | || |||| | || |||||||| ||||||||
Sbjct 93445 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 93386
Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223
||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| |||
Sbjct 93385 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 93326
Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283
| || |||| || ||| || ||||| || || | ||| || |||||||||| ||
Sbjct 93325 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 93266
Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341
| | | | | | | | || || ||| |||||||| || | | || | |
Sbjct 93265 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 93208
Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401
|||||| || |||||||||||||| | || || || || || | || || ||| |
Sbjct 93207 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAATAGG 93148
Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458
| ||||| ||| |||| | ||||| || |||||| ||||| || || || |
Sbjct 93147 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 93091
Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517
| || || | || | | ||||| || || || | | || || | |
Sbjct 93090 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCG-CAGAGCA 93032
Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577
| || |||| || || || || ||||| || ||||| || || || | ||| |||
Sbjct 93031 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 92972
Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637
|| ||||| || || || || ||| |||||| | | | || || ||
Sbjct 92971 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACA 92912
Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 118694
||||||| ||| | || | ||| | | | || | || || ||| || | ||
Sbjct 92911 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 92855
Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754
| | || || || | || || || || || |||| | ||| || || |
Sbjct 92854 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 92795
Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814
||||| |||||||| ||||||| ||| || || ||||| || | ||||||||| ||
Sbjct 92794 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 92735
Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874
||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| |
Sbjct 92734 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 92675
Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932
| ||||| || | ||| | | ||| || | | ||| || | ||||| |
Sbjct 92674 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCCT 92617
Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992
|||||||||| ||| || || || ||||| || || | || | ||| || ||
Sbjct 92616 TCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGC 92557
Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052
|| | ||||| | || | ||| | ||| || ||||| ||||||||||| || |
Sbjct 92556 ACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGAT 92497
Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112
| |||||||| || || ||| || || || || | || || | || || ||
Sbjct 92496 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 92437
Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172
||| | || | || || | || ||| | |||||| || || ||||| | || | |
Sbjct 92436 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 92377
Query 119173 -AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226
|| | ||| | | ||| |||||| ||||| | |||||| ||| || ||||
Sbjct 92376 CACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 92320
Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATT 119284
||||||| |||| | ||| | ||| || || || || ||| || ||| | | |
Sbjct 92319 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCC--AGT 92262
Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344
|| | || | ||| | || || ||||||||| || ||| ||| ||||| || ||
Sbjct 92261 AGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 92202
Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404
| ||||| | ||||||| || || || ||| |||| | | | | ||||||
Sbjct 92201 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCA 92142
Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464
|||| ||| ||| || || || ||||||||||| || || | || || ||||
Sbjct 92141 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAA 92082
Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGTG 119521
| | || ||||||| || ||| ||||||||||| || | || || || ||
Sbjct 92081 GAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCCA 92025
Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581
|||||| | || || ||||| | ||||| || || || | | |||| || |
Sbjct 92024 AATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 91965
Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623
| | ||||||| |||||| ||||||| ||||| ||
Sbjct 91964 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 91923
>seq1302
Length=29391
Score = 194 bits (214), Expect = 2e-44
Identities = 537/812 (66%), Gaps = 15/812 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| ||||||||||||||||| ||||| || | | | ||| ||||||||
Sbjct 20515 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 20574
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| || || ||||| | | || ||| | || | |||| | ||||||||
Sbjct 20575 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-CCAAGCGCGACAAGGAGACG 20633
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | |||| |||||||||||| ||| || |||||||| |||| ||| |||
Sbjct 20634 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACA 20693
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || || |||| ||| ||||||| ||||| || | ||| | ||
Sbjct 20694 GGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACAGCGTCAGTAATGATATCCTG 20753
Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| ||| | ||| || | | ||| | | | || ||| || |||||| ||
Sbjct 20754 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAGG--CA-GGCAAAGTC 20810
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||| ||||| |||||||| || || |||||| |||||| ||||||||
Sbjct 20811 AGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 20870
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | ||| ||||||||| ||||| ||
Sbjct 20871 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 20930
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203
| ||||| |||| |||||||| ||||||||| | ||| | | ||| ||
Sbjct 20931 AGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 20990
Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263
||||| | ||||| || ||| || || | ||||| || || | |||||| | |
Sbjct 20991 GGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGT 21050
Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323
| | || || |||||||| | || ||||| || || || ||| ||||
Sbjct 21051 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 21110
Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382
| | ||| || | ||| | ||||||| | || || ||| ||||| |||||
Sbjct 21111 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 21168
Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441
| | ||| | | || ||||| ||||| ||||| || |||| || || ||
Sbjct 21169 CCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCA 21228
Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498
||||| | | ||| ||| |||| | ||| || | |||||||||| |||
Sbjct 21229 AGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGA 21288
Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
||||| || ||||| | |||||| ||||||||
Sbjct 21289 TCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 21320
>seq614
Length=49638
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938
|| |||||||||||| || ||||| |||||||| || |||||| || ||| ||| ||||
Sbjct 22460 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 22519
Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998
| || || | || || || ||| |||| || ||| | | || | ||||||||||||
Sbjct 22520 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCAGGAATGTAGATCTTCTCCTTTTCGTG 22579
Query 180999 CATA 181002
|||
Sbjct 22580 AATA 22583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618424609297200
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