Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq927 250 3e-61
seq1302 152 6e-32
>seq927
Length=143536
Score = 250 bits (276), Expect = 3e-61
Identities = 1144/1788 (64%), Gaps = 51/1788 (3%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| ||||||| ||| | | |||||| || || || || || ||
Sbjct 91988 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 92047
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||||| || | | |||| || || | || || |||
Sbjct 92048 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCTTCTCCCACGCTC 92105
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || || || || |||||| |||| ||||||| | | | | |||||
Sbjct 92106 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 92165
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | || ||||| | ||||| | | ||||| ||||| ||| ||||
Sbjct 92166 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 92225
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516
|| |||||||| || || | || | | | || | | ||| || ||| || |
Sbjct 92226 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTACATCGCCGGTA 92283
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| || ||| ||| | ||| || |||| |||||||| || || ||| ||| || ||||
Sbjct 92284 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 92343
Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|||| | || | ||| ||| || || | || |||| || ||||| ||||
Sbjct 92344 ATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGC 92403
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| ||
Sbjct 92404 ACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTG 92463
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| |||
Sbjct 92464 CCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGA 92523
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
|| | ||| | || | || || || || ||||| ||| |||| | || |
Sbjct 92524 ACGGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAG 92583
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871
||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| |
Sbjct 92584 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 92641
Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931
||| | | ||| | || ||||| || | || || ||||| || | ||||
Sbjct 92642 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 92701
Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991
|||||| ||||| || ||||| |||| ||||| || |||||||| | ||| |||
Sbjct 92702 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 92761
Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051
|| ||||| || || || ||||| | || | | | || ||| ||||| ||
Sbjct 92762 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 92821
Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111
||||| || || | ||||| ||| | | | || || || | || ||| |
Sbjct 92822 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCT-- 92874
Query 105112 TGAAAAACTCCACGAAGTT--ACGAAAACTGTCA--------CCAAAAACCTAAACAGAG 105161
| ||| || |||||| || | | |||| ||||| ||||
Sbjct 92875 ---ACGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTGTTCGCAACCTGAACAAGA 92931
Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221
| || ||| || ||||| || || ||||| || ||| ||| | ||||| |
Sbjct 92932 TCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGAC 92991
Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 105280
| |||||||| ||||||||||| || || |||| ||| || || || ||| | ||
Sbjct 92992 CCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTC 93050
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
|| || || || || |||| || || || |||||||| || ||||| ||
Sbjct 93051 GAGTCACCGGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCC 93110
Query 105341 CTTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398
|| || || | || |||| ||| || ||||| ||| ||||| | ||||
Sbjct 93111 CTCACTGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTATTCCACCTTCAAAGGTT 93168
Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458
| || || || | || | || || || || |||||| | | || || | ||
Sbjct 93169 CCCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCT 93228
Query 105459 ACGACTGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516
|||||||| ||| || || | | | ||||| | || | ||||||||||| ||
Sbjct 93229 GGGACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCT 93286
Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576
| | ||||| ||||| || ||| ||| | || || |||| || || || ||||| ||
Sbjct 93287 CCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGA 93346
Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636
|||||||| | |||||||| | || | ||||| || ||||| | |||||||
Sbjct 93347 GCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAA 93406
Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 105696
| || | | ||||| || || ||||| |||||| | | ||||||| | |
Sbjct 93407 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCG 93466
Query 105697 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAA 105756
||| | | | |||||||||||| || ||| | || || || | |||
Sbjct 93467 CATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGC 93526
Query 105757 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 105816
|||| || |||||||| ||| | | ||| || | ||||| || |||||
Sbjct 93527 TCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAGGTCGTTCAGATGGCTGCTGATCG 93586
Query 105817 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATG 105874
||| ||||||||||| |||| ||| |||| || |||| | || ||||||
Sbjct 93587 AGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATG 93644
Query 105875 TCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTA 105933
|||| || | ||||||| | | || | |||||| || ||||| || || |||||
Sbjct 93645 GGCAAGATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTA 93703
Query 105934 TTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981
||||| || | |||| || || |||||||||| | ||||
Sbjct 93704 CTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 93751
>seq1302
Length=29391
Score = 152 bits (168), Expect = 6e-32
Identities = 181/243 (74%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773
|||||| | ||||| | || |||| || || | |||||| || || ||||| ||
Sbjct 21044 CTCTTTAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 20985
Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
||| | | | || | | | | ||||||| |||| ||| | || || || ||||||
Sbjct 20984 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGA 20926
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892
||||||||||||| |||| ||||| | |||| | |||||||||||||| ||||||||
Sbjct 20925 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 20866
Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952
||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || ||
Sbjct 20865 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 20806
Query 94953 TGC 94955
|||
Sbjct 20805 TGC 20803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583250811658800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |