Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq927 297 2e-75
seq606 181 1e-40
seq504 156 5e-33
seq737 123 3e-23
seq1302 113 5e-20
>seq927
Length=143536
Score = 297 bits (328), Expect = 2e-75
Identities = 1146/1767 (65%), Gaps = 69/1767 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| ||||||||| | ||||
Sbjct 93721 GCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCAGCCTGCAAAGTGC 93662
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
||| ||| ||| | | ||||||| || |||| ||||||||| ||||| ||||||
Sbjct 93661 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 93602
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210
||||| || || ||||| || ||||| | || | || | | | | || |||||
Sbjct 93601 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATCTCCCA 93543
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || ||||| |||| | || | || |||| || | | | | ||
Sbjct 93542 AACGGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 93486
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||| | || |||| | || |||| || | ||| | ||| | | | ||
Sbjct 93485 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 93426
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
|| || | || | | ||| || | || |||| || ||||| || || |
Sbjct 93425 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGTCGTTG 93369
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || ||||||||| || || ||||| | || ||
Sbjct 93368 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 93309
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | | | ||| || || | |||||| |||||| |||||
Sbjct 93308 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 93249
Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| | | || | ||| | ||| | ||| |||| |||||||||| |
Sbjct 93248 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 93194
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| ||||| || || || || || ||| || || || |||||| |||
Sbjct 93193 TGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAATAGGGACCCTCCTCCTTA 93134
Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672
||||||| |||| || | ||||| ||||| |||||| ||| |||| ||||||
Sbjct 93133 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTT 93075
Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732
| | || |||| || ||||| | || || || | ||| | || || ||
Sbjct 93074 GAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAG 93015
Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791
||||||||| || | | || || ||||||||| |||| | | || | ||||| | |
Sbjct 93014 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 92956
Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851
||||| ||| |||||||| |||||||||||| ||||||| | | || |
Sbjct 92955 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCT 92896
Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905
|| | |||| |||||| | | || | || | || | || || ||
Sbjct 92895 TGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 92836
Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962
| || || || ||||| || || ||||| |||| || | ||| ||| | ||||| |
Sbjct 92835 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCAATAATTTCAG 92779
Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020
|||||| || || ||| || ||||| ||||| || ||||| |||| ||||||
Sbjct 92778 TGCACAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 92721
Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080
|| ||||||||| |||| | ||| | |||||||| ||| | || || |||||||
Sbjct 92720 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 92661
Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140
||||| | | ||||||| |||||| ||||| || | | ||||| ||||
Sbjct 92660 CCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 92601
Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199
| ||||||| | |||| | ||| | | |||| | ||||||||||| |||||||
Sbjct 92600 CAGAGCCTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACA 92542
Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259
|||| |||||| || || || ||| |||||||||| ||||||||||| ||||
Sbjct 92541 TCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 92482
Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319
|| ||| ||||| ||| || ||||||| | ||| ||||| || | || || |
Sbjct 92481 CGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGA 92422
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373
| || | || || | ||||| ||||| || || | ||| | | || | ||||
Sbjct 92421 ACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 92363
Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
||||||||||| ||| || || ||||| ||| || ||||| | |||||| | |
Sbjct 92362 --TTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 92305
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491
||| | || |||||| ||||| |||| || || | || || || |||
Sbjct 92304 CACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCA 92245
Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551
|| ||||| || ||||| | | ||| || ||| ||||| || | || ||
Sbjct 92244 CGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 92187
Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611
|| |||||||| || || || | ||||| |||| |||||| || ||||| || ||
Sbjct 92186 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GG 92128
Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670
||| | |||||| ||||| || || || | || || |||| | | | ||||
Sbjct 92127 GCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACA 92068
Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
|||||| || || ||| ||| || ||||| ||||| |||||| | || ||||
Sbjct 92067 TCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACAC 92008
Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756
|||| | ||||| ||| ||||| ||||
Sbjct 92007 GCATGATCATGTGCTGAGGGCG-CTCG 91982
>seq606
Length=53999
Score = 181 bits (200), Expect = 1e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| |||| ||| |
Sbjct 5884 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 5943
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| || ||||| ||||||||||| || ||
Sbjct 5944 AATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 6003
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||||||||| || | || ||||| || ||||| || | || ||||||
Sbjct 6004 TTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 6063
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || |||||||| ||| | || || || |||||
Sbjct 6064 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 6098
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || ||||| |||||||| || || ||||||
Sbjct 6100 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 6159
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||| || || |||||||||||||| |||||||| || ||
Sbjct 6160 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 6219
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| |||||||| || |||| || || || | ||||| ||
Sbjct 6220 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 6279
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||| ||||| || | || | |||||||| |||||
Sbjct 6280 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 6326
Score = 167 bits (184), Expect = 3e-36
Identities = 177/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| ||||| || ||||| ||||| || || |||||||| ||||| ||
Sbjct 6328 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 6387
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| || ||||||||||||||||| ||||| || || ||
Sbjct 6388 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAA 6447
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| ||
Sbjct 6448 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 6506
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || |||||||| || || | || ||||||||||| ||
Sbjct 6507 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGGCCA 6557
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| | ||||||||||| || || || |||||||||||
Sbjct 5587 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 5646
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | ||| | ||| | || ||||||||||||||||| ||||| || |||
Sbjct 5647 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 5706
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| || | ||||| || || ||||| || ||||| | || || || | || ||
Sbjct 5707 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 5766
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || ||||| ||||||||||| || || | || || || |||||
Sbjct 5767 AACATTCAGAAGGAGTCCACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 5816
>seq504
Length=275141
Score = 156 bits (172), Expect = 5e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 23088 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 23147
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 23148 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 23207
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 23208 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 23266
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || || || |||||
Sbjct 23267 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 23314
>seq737
Length=34572
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || || ||||| ||||| || | |||
Sbjct 19729 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 19670
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| ||
Sbjct 19669 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 19610
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||||||||| |||||||||| || || || | ||||| || |||| |||
Sbjct 19609 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 19550
Query 27595 G 27595
|
Sbjct 19549 G 19549
>seq1302
Length=29391
Score = 113 bits (124), Expect = 5e-20
Identities = 149/206 (72%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719
|| ||||| || ||||||||||| ||||| | || | || || |||| ||||||
Sbjct 21008 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 20949
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|||| || || || ||| || || || ||||| ||| | ||| ||||| |||
Sbjct 20948 CTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 20889
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| || || ||||| |||||| | || || |||||||| ||||||||
Sbjct 20888 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 20829
Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865
|| ||||| || ||| || |||||
Sbjct 20828 GATGAGGGTCTTCACACTGACTTTGC 20803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570300633434400
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