Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq606 149 1e-30
seq737 143 6e-29
seq504 140 8e-28
seq927 113 1e-19
seq1352 104 6e-17
>seq606
Length=53999
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||||||||| ||||| || || | ||||| |||| | |||
Sbjct 6321 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 6262
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| |||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 6261 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 6202
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||||||| || ||||| || || | || || || |
Sbjct 6201 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 6142
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | || || | ||| | ||||||
Sbjct 6141 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 6100
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||||| || || ||||| ||||| || || || |||| ||||| ||| ||| ||
Sbjct 6548 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 6489
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| | |||||| |||||||||||||| || ||||| || || ||||||||
Sbjct 6488 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCC 6429
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || ||||| |||||| ||||| ||||| || || || || |
Sbjct 6428 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 6369
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| ||||| || || | ||| ||
Sbjct 6368 GTGATGGTCTTTCCGGTGAGAGTCTT 6343
>seq737
Length=34572
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | ||||| ||||| || |||||||| |||||||||||
Sbjct 19551 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 19610
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 19611 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 19670
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 19671 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 19729
>seq504
Length=275141
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| ||||| || || |||| ||||| ||| || || | |||||
Sbjct 23299 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 23240
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| ||||| || ||||| || || || || ||||||||
Sbjct 23239 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 23180
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | |||||||||
Sbjct 23179 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 23120
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | || || | ||| | ||||| ||
Sbjct 23119 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 23085
>seq927
Length=143536
Score = 113 bits (124), Expect = 1e-19
Identities = 188/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
|| |||||| |||| || | ||| || ||||||| ||||| || | || |||
Sbjct 92743 TTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 92684
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || | |||||| | |||||||| ||||| || | ||| | | ||||
Sbjct 92683 GTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTG 92624
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| ||| ||||||||||||||||||| |||| || || | ||||||| ||| ||||
Sbjct 92623 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 92564
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | || |||| || || | |||| || | |||||||
Sbjct 92563 CCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATG 92504
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|| || |||| |||||| |||| ||||||
Sbjct 92503 AAAAGATCAGGGATCCAAAGGGCGAGGAAAAG 92472
>seq1352
Length=686
Score = 104 bits (114), Expect = 6e-17
Identities = 196/281 (70%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499
|| || ||||||||||| | | || ||||| ||||| |||||| ||||| || |
Sbjct 83 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCTTTTTCAGTGTT 141
Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558
|| || | ||| |||| || || || |||| ||| | | ||||| ||| | |
Sbjct 142 AATTAGACTTGAACTTAG-TGGGCCAGGAGTTCAA-TAT--ATTTCTAATAATCAATTAT 197
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| ||| | | ||||| || || || | | ||||| ||||| | |||||||| |
Sbjct 198 ATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCAT 257
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| ||||| || || ||||||| || | ||||||||| | || | ||| |||||||| |
Sbjct 258 TAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGGGGTCCGGATATGGCAT 317
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
| || || | || ||||||||||| |||||| |||| |||
Sbjct 318 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCT 358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192510267350780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |