Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq504 109 1e-18
seq606 105 2e-17
seq737 93.3 1e-13
>seq504
Length=275141
Score = 109 bits (120), Expect = 1e-18
Identities = 159/225 (71%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || || || ||||| || ||||||||||| ||| | || |
Sbjct 23306 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 23247
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || || ||||| || | ||||||||| | | ||| || ||
Sbjct 23246 TCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTC 23187
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| ||| ||| || ||||| ||
Sbjct 23186 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 23127
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|| || || |||||||| ||||| ||||| | |||||| || ||
Sbjct 23126 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 23082
>seq606
Length=53999
Score = 105 bits (116), Expect = 2e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| ||||| |||||||| ||||| || || ||||||||||| | | ||| |
Sbjct 5808 GAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCG 5749
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
|| || || || || |||||||| || |||| | |||||||| | | || || |
Sbjct 5748 GCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGT-TGCTGGTCGGGGGGAATGCCCT 5690
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| || ||||| || |||||| | || | |||| ||| ||| || || || |
Sbjct 5689 CCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGG 5630
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || ||||| || | ||||| ||||||| ||||||
Sbjct 5629 TGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 5590
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||| || || |||||||| ||||| || ||||||||||| ||| || || |
Sbjct 6545 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 6486
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| | || || ||||||||||| | ||| || || | | || || |||
Sbjct 6485 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCC 6426
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064
|| || ||||| || || || | || | ||| ||| | ||| || ||||| |
Sbjct 6425 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGA--CTCGACCTCAAGGG 6368
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || || |||||||||||||| || | ||||||
Sbjct 6367 TGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 6328
>seq737
Length=34572
Score = 93.3 bits (102), Expect = 1e-13
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | ||||| ||||| || || || || ||||||||
Sbjct 19551 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 19610
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||| ||||||| | || || ||||| || || || || |||||| | ||
Sbjct 19611 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 19670
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| || ||| || || || || || || |||||||| || |||||||||||
Sbjct 19671 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 19729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153800546839270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |