Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq606 172 1e-37
seq504 168 1e-36
seq737 147 5e-30
seq1302 122 2e-22
seq768 91.5 3e-13
>seq606
Length=53999
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | ||| || || || |||||||| ||||
Sbjct 5817 ACCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGA 5758
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||| || ||||| ||||| ||||| ||
Sbjct 5757 GAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGG 5698
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || || | ||||||||||| |||| || ||
Sbjct 5697 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAAC 5638
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 5637 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 5590
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | || ||| || || ||||||||||| ||
Sbjct 6099 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGC 6040
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| || || ||||| || || |||||||||| || || |||||| ||
Sbjct 6039 AAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 5980
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||||| || || | ||||| || || || | |||||
Sbjct 5979 GATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 5920
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093
|| |||||||| ||||| || || | ||||| |||| |||
Sbjct 5919 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 5878
Score = 145 bits (160), Expect = 2e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || ||| || || ||||||||||| |
Sbjct 6327 ACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 6268
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || |||||||| || ||||| || || || ||||| | || ||||| || ||
Sbjct 6267 AAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGG 6208
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| |||||| ||||| || || |||| || || || || | ||||
Sbjct 6207 AATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCGA 6149
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| || ||||| || || | ||||| ||||| || |||||
Sbjct 6148 CTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 6100
Score = 129 bits (142), Expect = 1e-24
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 6554 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 6495
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||| || | || || || || ||||| | ||| ||||| ||| ||
Sbjct 6494 AAG-GTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 6436
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| || ||||| ||| || ||| | ||||||||||| | ||||
Sbjct 6435 AATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCGA 6377
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| || || | |||||| || || ||||||||
Sbjct 6376 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 6328
>seq504
Length=275141
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 23315 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 23256
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || |||||||| | || || |||||| ||
Sbjct 23255 CAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 23196
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 23195 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 23136
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 23135 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 23085
>seq737
Length=34572
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||||||||| || || || || || ||||||
Sbjct 19551 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 19610
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || |||||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 19611 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 19670
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 19671 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 19729
>seq1302
Length=29391
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | || ||| |||| || ||| |||||||||| |||| ||||||
Sbjct 20719 AGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGA 20660
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
||| || || || ||||| ||||||||| | | || ||||| || ||||||| || |
Sbjct 20659 AGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTT 20600
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| || ||| |||||||||| || |||||| ||| || || || || || ||||
Sbjct 20599 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 20540
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| |||||||| ||| || || | | |||||||
Sbjct 20539 TCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 20500
>seq768
Length=19994
Score = 91.5 bits (100), Expect = 3e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 315640 AATTCGCCACTGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCC 315699
|| ||| || |||| |||| | | || ||||| |||| ||||| || |||| | |
Sbjct 5201 AACTCGGCAGAGTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAC 5142
Query 315700 ATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGG 315759
| |||||||||| || || || | | ||||||| ||||| ||||| ||||| | ||
Sbjct 5141 AGGGCACCGAGAGAGTCACGATCGAGATAGTTGGTAGGCTCGTCAAGGACGATAAGATGA 5082
Query 315760 GGTTGTTGCCATAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCC 315818
||| | ||||| ||||| ||| | | || ||| | || ||||||||||| ||
Sbjct 5081 GGTCGCTGCCA-AGAGCAAGCGGCAAGGACAGTCTTGACACGCTGACCACCAGACAGACC 5023
Query 315819 ACGGATGCGAGAATGAG 315835
||| |||||||| ||||
Sbjct 5022 ACGCATGCGAGAGTGAG 5006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046720826455980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |