Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1097 242 5e-59
seq192 147 3e-30
>seq1097
Length=481400
Score = 242 bits (268), Expect = 5e-59
Identities = 572/846 (68%), Gaps = 27/846 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | |||||
Sbjct 425427 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 425368
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | || |||||| ||||| || | ||
Sbjct 425367 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 425308
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | || ||||| || | ||| ||||| || |||||||| || || || || ||
Sbjct 425307 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAG-CG 425249
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256
|||| | ||| | || || |||| |||| |||| ||||| ||||| |||||||
Sbjct 425248 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 425190
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315
| |||||| | ||||| || | ||||| || ||||||| ||||| || || |
Sbjct 425189 TGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCG 425130
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| | ||| | ||||||||||| || || || | || | || || || |||||
Sbjct 425129 CCCAGCGAACCTAC-CTCTTTAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCC 425071
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| || || |||||| | || | | || || | ||| | | || || ||
Sbjct 425070 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 425011
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
||||| || || ||||| |||||||| ||| || || | ||||| |||||||||
Sbjct 425010 TTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAG 424951
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
||||| || ||||||||||| ||||| | |||||| | || ||||| || |||||
Sbjct 424950 AAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 424891
Query 125556 CTACACTGTGACTTTGCCATTCTACT-GTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614
|| ||| |||||||||| || || || || || | ||| |||| | |
Sbjct 424890 CTTCACACTGACTTTGCCTGCCTCCTCCACTCCCACCT-CAAGGGTC----GTGC-CAGC 424837
Query 125615 CAGC-GATGA-AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672
||| ||||| ||| |||| | || || ||||| | || || || |||||
Sbjct 424836 AAGCAGATGATCCAGGATATCA------TTACTGACGCCGTCACCATTGAGCAGGAGTTC 424783
Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732
|| || || | || || | | | |||||||||| | || ||| |||||
Sbjct 424782 CTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTAC 424723
Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAAC 125789
|| ||||| || || |||||||| || || | ||||| || ||| |||||||
Sbjct 424722 ATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CGCTTGGCAACGAGAAGGTTTACAAG 424666
Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849
|||| || ||||| || |||||| | ||| || || | || ||||||||||| |||
Sbjct 424665 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTC 424606
Query 125850 GAGAAG 125855
||||||
Sbjct 424605 GAGAAG 424600
>seq192
Length=101724
Score = 147 bits (162), Expect = 3e-30
Identities = 306/449 (68%), Gaps = 10/449 (2%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | ||
Sbjct 51323 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 51382
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || | || | || || ||| || || |||| || ||| | |||
Sbjct 51383 GTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 51442
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052
| || || || ||| | || ||| | ||||||||||| || || ||||||
Sbjct 51443 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 51500
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| || ||||||||| || || || || || |||| |||| || || |||
Sbjct 51501 -ACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAG 51559
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171
|| ||||| |||| |||||| | |||||| | || |||| | || | ||
Sbjct 51560 TTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGC 51618
Query 97172 ACGAGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230
| |||| ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| |
Sbjct 51619 TCAGAAACTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATGC 51677
Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290
||||||||||| || || ||||| ||||||||| || | || |||||| |||
Sbjct 51678 TCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCT 51737
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTAC 97319
|||| |||||||| |||||| | ||||||
Sbjct 51738 CCAACCTGTGCACTGAAATTATTGAGTAC 51766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741048741802040
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