Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq192 174 2e-38
>seq192
Length=101724
Score = 174 bits (192), Expect = 2e-38
Identities = 572/882 (65%), Gaps = 14/882 (2%)
Strand=Plus/Minus
Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031
||| || || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 51730 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 51671
Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 51670 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 51612
Query 63091 TTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCG 63146
| || ||| | |||| | || ||||| | |||| ||||||||
Sbjct 51611 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCC 51556
Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206
||||| | | | | | ||||| || || | || ||||||| || ||| || |||
Sbjct 51555 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCG 51496
Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266
| | | || || ||||| || |||||||| |||||||| || | || || || | |
Sbjct 51495 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGG 51436
Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326
| | ||||| || || ||||| ||||| |||||| | | | ||||||
Sbjct 51435 GCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAG 51376
Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386
||||| || || | ||| ||||| | | | || || || ||||| || ||||| || |
Sbjct 51375 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 51316
Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446
|| | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| |||
Sbjct 51315 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTG 51256
Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCC 63504
||||||| ||| ||| ||| | ||||| ||| | | || | |||| || || |
Sbjct 51255 GTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCAC 51198
Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564
| ||||| || ||||| | || || || | || || ||||| ||||| || || |
Sbjct 51197 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 51138
Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624
| || |||| | | | || || |||| |||| | || || || || || |
Sbjct 51137 CGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 51078
Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684
| | || |||||||| || || || |||| || | || ||||| ||||| |
Sbjct 51077 AGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 51018
Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744
|| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 51017 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 50958
Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804
|| || ||||| || || || | | ||| ||| |||||||| || || ||||
Sbjct 50957 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 50898
Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846
| || | |||| || || || || || | ||| | ||||
Sbjct 50897 AGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 50856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622938408657640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |