Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq192 188 9e-43
>seq192
Length=101724
Score = 188 bits (208), Expect = 9e-43
Identities = 575/881 (65%), Gaps = 12/881 (1%)
Strand=Plus/Minus
Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 51730 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 51671
Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 62945
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 51670 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 51612
Query 62946 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 63002
| || ||| | ||| | ||| ||||| | |||| |||||||| |
Sbjct 51611 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 51555
Query 63003 CTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63062
|||| | | | | || ||||| || || | || ||||||| || ||| || ||||
Sbjct 51554 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGT 51495
Query 63063 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63122
| | || || ||||| || |||||||| |||||||| || | || || || | ||
Sbjct 51494 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 51435
Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182
| ||||| || || ||||| ||||| |||||| | | | |||||| |
Sbjct 51434 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 51375
Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242
|||| || || | ||| ||||| | | | || || || ||||| || ||||| || | |
Sbjct 51374 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 51315
Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302
| | ||| ||||| || | || | | ||| |||| || ||| || |||||||| ||||
Sbjct 51314 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 51255
Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 63360
| || | ||| ||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 51254 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACC 51197
Query 63361 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 63420
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 51196 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 51137
Query 63421 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63480
||| |||| | | | || || |||| |||| | || || || || || ||
Sbjct 51136 GTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 51077
Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540
| || |||||||| || || || |||| || | || ||||| ||||| | |
Sbjct 51076 GAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 51017
Query 63541 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63600
| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 51016 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 50957
Query 63601 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660
|| || ||||| || || || | | ||| ||| |||||||| || || |||||
Sbjct 50956 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 50897
Query 63661 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
|| | |||| || || || || || | ||| | ||||
Sbjct 50896 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 50856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633623057868400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |