Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq942 168 1e-36
seq210 167 4e-36
seq221 147 4e-30
seq113 127 4e-24
seq239 98.7 2e-15
seq399 86.0 1e-11
>seq942
Length=1175861
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || |||||||| || || ||||| ||||| |||
Sbjct 559066 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 559007
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | | ||| |||||||| |||
Sbjct 559006 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 558947
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| ||||| ||||| | || || ||
Sbjct 558946 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 558887
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||| || || || | |||||||||||| |||||||| |||
Sbjct 558886 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 558836
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || || || || || || ||||| || |||||
Sbjct 559576 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 559517
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| || ||||| ||||||| ||||| ||||| |||
Sbjct 559516 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 559457
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||| || || ||||| || | ||| || |||
Sbjct 559456 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 559397
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| || ||||| ||||| ||||||||||||||||| || |||||
Sbjct 559396 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 559350
Score = 120 bits (132), Expect = 6e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || || || || || || ||||| || ||||
Sbjct 559348 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 559289
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| || || || || || | || ||||| || ||
Sbjct 559288 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 559229
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||||| ||| || |||||||| || | || || ||
Sbjct 559228 ATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 559169
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| | |||||||| || || |||||||||||||||| |||
Sbjct 559168 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 559128
>seq210
Length=555789
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || |||||||| || |||||||| || |||
Sbjct 362850 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 362909
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || ||||| || ||
Sbjct 362910 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 362969
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 362970 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 363029
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 363030 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 363076
>seq221
Length=632464
Score = 147 bits (162), Expect = 4e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| || ||||| ||
Sbjct 151584 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 151525
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| |||||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 151524 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 151465
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| |||||||| |||||
Sbjct 151464 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 151406
>seq113
Length=146548
Score = 127 bits (140), Expect = 4e-24
Identities = 171/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 59378 GTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAAC 59437
|| ||||| || | |||||||||||| || || || |||||| |||| |||||||||
Sbjct 61908 GTGCCGACACAGATGGCGCCGCCAAATGTATCTCGGTTAACCTGTATGACGCGGTAGAAC 61967
Query 59438 AGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGG-GCGAACCTCGAA 59496
|||||||| | |||||| | |||||||||||||||| ||||| | | | | |||
Sbjct 61968 AGTTCCTGCGTAGCACCAGCACCCTGCTCAACCCAAGTCTGCTCGGGTGTGGAAC-GGAA 62026
Query 59497 GAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATGGGAAAAGTAGGGC-ATGATTT 59555
|||| |||| |||||| || || || ||| | || | || || | | | || |
Sbjct 62027 CCACTGAGGGGACTGCACGATAGCAATTTTGTCATC-GGCGAGGTGTTCGACAACGAGCT 62085
Query 59556 CCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGAAGATGGCAAAGAAG 59608
|||||| |||||||||| || |||||||| |||||||| || ||||| ||
Sbjct 62086 CCTTGACAAAGTCAGGGCGAGGGCAGAAGTCTGCATCGAAAATCACAAAGTAG 62138
>seq239
Length=496576
Score = 98.7 bits (108), Expect = 2e-15
Identities = 437/677 (65%), Gaps = 39/677 (6%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || ||| |||| || ||||| || || || ||||||
Sbjct 180334 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 180275
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099
||||| | ||| || || || ||||| |||| | | ||| |||| ||
Sbjct 180274 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 180215
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| || ||||| || ||||| || |||| |||||| ||||| ||||| || ||
Sbjct 180214 ATGAG-CTCACCAGTGAGCACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 180156
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214
||| |||| ||||| || | ||| || | || || |||| | | |
Sbjct 180155 GACGGCAATACGGGAGCCCAGAGAGCACTGGAAGGAGATGTCCTGGATCTGAGGCTTGGA 180096
Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267
|| |||| |||| |||| || | |||| || ||||| | |
Sbjct 180095 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGC 180045
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||| ||||| ||| || | | ||
Sbjct 180044 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAAGTGAACTCCATCTCGGACTC 179985
Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
|| ||||||||||| |||| |||| || || ||||| |||| ||||||
Sbjct 179984 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 179928
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| || | ||||||||| | |||||| || || || ||| | ||| ||
Sbjct 179927 ACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGT 179872
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502
||| ||||||||||||||||| || || ||||| || | || | | | | ||
Sbjct 179871 TGTCGAGGAAGCCAGAGTCGTGAGAGACGATGATAGAAGTGCAAG---GGGA-GTTGATG 179816
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| | |||||| ||||| | || |||| ||||| ||||| || || |||
Sbjct 179815 AGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCATCAAGA 179756
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
||||| || || | | | || || ||| || |||| |||||||| ||||| ||
Sbjct 179755 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 179696
Query 225623 CCGGACAGGGAGCCGAT 225639
|| || |||| || |||
Sbjct 179695 CCAGAAAGGGCGCTGAT 179679
>seq399
Length=1267120
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | ||||||||| |||||| | |||| ||| |||||| || | | |
Sbjct 717907 TAACGCCACTGAAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCTAGA 717966
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | || | || || | |||||| |||||| || || ||
Sbjct 717967 GCGTGCTGCTTGATATAACCAATACGAAGGTTGGGGTGCTTCTCAACCTTTCCGGTGGTA 718026
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | ||||||||| |||| |||||| || || | |||||| ||||| |||||||||
Sbjct 718027 GGGATAGTCTCGCCGGTAAGGAGCTTGATAAGAGTCGACTTGCCAGCACCGTTGGGGCCA 718086
Query 225158 AT 225159
||
Sbjct 718087 AT 718088
Score = 84.2 bits (92), Expect = 4e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502
||| ||||| || |||||||| || ||||||| ||| | | || | | ||||
Sbjct 718377 GTCCAGGAATCCGGAGTCGTGAGAAACAATGA--GACTGGTGATGTCGGGATGAGACTTG 718434
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| | |||||| || | |||| || || | ||||| |||||||||||||||
Sbjct 718435 AGGTAGTTCTCGAGCCAAGCGATGTTGGCAACATCAAGATGGTTAGTAGGTTCGTCCAGA 718494
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
|| || | ||||||| ||| || || || | |||| ||||||||| ||||| ||
Sbjct 718495 AGGAGAACGTCAGCACGCTGGAGCATAGCTCGGGCCAGAGCCAGCTTCATCTTCCAACCT 718554
Query 225623 CCGGACAGGGAGCC 225636
|| || ||||| ||
Sbjct 718555 CCAGAAAGGGAACC 718568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921609393603880
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