Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq942 140 8e-28 seq210 113 1e-19 seq1097 96.9 8e-15 seq221 91.5 3e-13 >seq942 Length=1175861 Score = 140 bits (154), Expect = 8e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| |||| || ||||| |||| || || || ||||| || |||||| Sbjct 559807 TGGCCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCG 559748 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| || ||||| || || || || |||||||| |||||||||||| | Sbjct 559747 CTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGG 559688 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || ||||| || || ||| |||||||| || |||| || || || || Sbjct 559687 GGAATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTC 559629 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| |||||||| || || |||||||| Sbjct 559628 GACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 559578 Score = 107 bits (118), Expect = 5e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| || || || || ||||| | ||| || || ||||| Sbjct 559541 TTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAA 559482 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGT 288400 ||| || ||||||||| || || || || || |||||||| || ||| ||||| | Sbjct 559481 GATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACAT 559423 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | |||| || || ||||| || || || ||||| || || || ||||||| Sbjct 559422 TATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGA 559363 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 559362 CGAAGATTTGCAT 559350 Score = 104 bits (114), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||| || || || || || || || | | Sbjct 559066 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 559007 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| |||| || || || || ||| Sbjct 559006 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGG---TCGGGG 558950 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || | || || || || |||| ||| || || Sbjct 558949 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCA 558890 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| ||||| ||||| ||||||| ||||||||||| |||||||| ||| Sbjct 558889 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 558836 >seq210 Length=555789 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || |||||| Sbjct 362850 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 362909 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || || || || ||||| || ||||| || | ||| Sbjct 362910 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 362969 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | ||| || || || Sbjct 362970 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 363029 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| || || ||||||||||| |||||||| Sbjct 363030 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 363076 >seq1097 Length=481400 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||| | ||| ||| | || ||| | | |||| ||||| | || |||||||| Sbjct 424788 GAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAG 424729 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 || || || || ||||| ||||||||| || | || || || | ||||| || ||| Sbjct 424728 CAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTAC 424669 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 || | | || ||||||| ||| ||||| || || || | || ||||| |||||| Sbjct 424668 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTC 424609 Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324 ||||| |||||||| |||||| || Sbjct 424608 TTCGAGAAGCGTGTTGCCGACTACCA 424583 >seq221 Length=632464 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| || || || || || | || || || ||||||||| Sbjct 151584 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 151525 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||| || || || || |||||||| || | || || || Sbjct 151524 AGTCGCTGTTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 151468 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || ||||| ||||| ||| Sbjct 151467 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 151408 Query 288463 AA 288464 || Sbjct 151407 AA 151406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179637335930462