Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq210 111 2e-19
seq942 100 3e-16
seq221 86.0 6e-12
>seq210
Length=555789
Score = 111 bits (122), Expect = 2e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || || || | |
Sbjct 362883 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 362942
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 362943 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 363002
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 363003 TTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 363061
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 363062 GACGAAAATCTGCAT 363076
>seq942
Length=1175861
Score = 100 bits (110), Expect = 3e-16
Identities = 143/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || |||||||||||||||| || || || || | || ||||| |
Sbjct 559773 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAG 559714
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
|||| ||||||||||| || || || ||||| || ||||| ||| | || | ||
Sbjct 559713 CGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 559655
Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| ||| || | ||||| | ||||| ||||| | || | || || || || |||||
Sbjct 559654 ACGTTG-TCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 559596
Query 138597 TTTTACAAAAATCTGCAT 138614
|| ||||||||||||||
Sbjct 559595 CTTCACAAAAATCTGCAT 559578
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| ||||||||||||||| | || || ||| |||||||| || || | |
Sbjct 559315 GATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCA 559256
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538
|||| || ||||| ||||| ||||| || || || ||||| ||| | |||| |||
Sbjct 559255 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTTGACTTAAC 559197
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||| |||| |||||| ||||| | || | || || ||||| || || |
Sbjct 559196 ATTG-TCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCT 559138
Query 138599 TTAC 138602
| ||
Sbjct 559137 TGAC 559134
>seq221
Length=632464
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || |||||||||||| | ||| || |||||||| || ||||| | |||
Sbjct 151586 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 151527
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| || |||||||||||||| || || || || ||||| ||| || || | ||||
Sbjct 151526 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 151468
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||| | ||||| ||||||| || | || || || ||||| || || ||
Sbjct 151467 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 151408
Query 138604 AAAATCTGCATGG 138616
||| ||| ||||
Sbjct 151407 AAA--CTGGATGG 151397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496255396496880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |