Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq210 111 2e-19 seq942 100 3e-16 seq221 86.0 6e-12 >seq210 Length=555789 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 362883 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 362942 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 362943 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 363002 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 363003 TTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 363061 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 363062 GACGAAAATCTGCAT 363076 >seq942 Length=1175861 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||||||| || || || || | || ||||| | Sbjct 559773 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAG 559714 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||||||||| || || || ||||| || ||||| ||| | || | || Sbjct 559713 CGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 559655 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | ||||| ||||| | || | || || || || ||||| Sbjct 559654 ACGTTG-TCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 559596 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 559595 CTTCACAAAAATCTGCAT 559578 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || ||| |||||||| || || | | Sbjct 559315 GATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCA 559256 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| || ||||| ||||| ||||| || || || ||||| ||| | |||| ||| Sbjct 559255 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTTGACTTAAC 559197 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| |||| |||||| ||||| | || | || || ||||| || || | Sbjct 559196 ATTG-TCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCT 559138 Query 138599 TTAC 138602 | || Sbjct 559137 TGAC 559134 >seq221 Length=632464 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| | ||| || |||||||| || ||||| | ||| Sbjct 151586 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 151527 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || |||||||||||||| || || || || ||||| ||| || || | |||| Sbjct 151526 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 151468 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | ||||| ||||||| || | || || || ||||| || || || Sbjct 151467 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 151408 Query 138604 AAAATCTGCATGG 138616 ||| ||| |||| Sbjct 151407 AAA--CTGGATGG 151397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255396496880