Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1097 192 7e-44
seq192 154 2e-32
>seq1097
Length=481400
Score = 192 bits (212), Expect = 7e-44
Identities = 538/817 (66%), Gaps = 23/817 (3%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| | || ||||||||||||||||| ||||| ||| | ||| ||| ||||||||
Sbjct 424585 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 424644
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345
|| || || ||||| | | || ||| | |||| |||| | |||
Sbjct 424645 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 424699
Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405
|||||||| | |||| |||||||||||| ||| ||||||||||| |||| |||
Sbjct 424700 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 424759
Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465
||| || || || || || |||| ||| ||||||| || || || | |||
Sbjct 424760 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTAATGATA 424819
Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522
| || || | | | | || | | ||| | | | || ||| || |||
Sbjct 424820 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAGG--CAG-GCA 424876
Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582
|| || ||| |||||||| ||||| |||||||| || || |||||| |||||| |||
Sbjct 424877 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 424936
Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642
|||||||| |||||||| | |||||| || | || | ||| ||||||||| |||
Sbjct 424937 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 424996
Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702
|| ||| ||||| |||| ||||||| |||||||||| | ||| | | |||
Sbjct 424997 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 425056
Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762
|| ||||| | ||||| || ||| || || | ||||| || || | ||||||
Sbjct 425057 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGG 425116
Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822
| | | | || || |||||||| | || ||||| || || || ||| |
Sbjct 425117 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAG 425176
Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881
|||| | | ||| || | ||| | ||||||| | || || ||| ||||| ||
Sbjct 425177 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 425235
Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940
||| | | ||| | | || ||||| ||||| ||||| || |||| || |
Sbjct 425236 CTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGA 425294
Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997
| || ||||| | | ||| ||| |||| | ||| || | ||||||||||
Sbjct 425295 AAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGT 425354
Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||||||||| || ||||| | |||||| ||||||||
Sbjct 425355 GGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 425391
>seq192
Length=101724
Score = 154 bits (170), Expect = 2e-32
Identities = 1167/1855 (63%), Gaps = 55/1855 (3%)
Strand=Plus/Minus
Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578
|||| | |||||||||| || || |||| || || ||||||||||| || |||
Sbjct 52722 TCAACGGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 52663
Query 115579 TTGAGCCCCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACT 115637
||||| || |||||||| | | || | ||||| || | |||| | || ||
Sbjct 52662 TTGAGGCCAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 52604
Query 115638 TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCAT 115697
| |||| || ||||| ||||| ||||| |||||| || ||||| || |||||
Sbjct 52603 CTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCAT 52544
Query 115698 ATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATC 115757
| || || | | ||| ||||| || || | || || ||| | ||| |
Sbjct 52543 CTGAACGACCTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGC 52484
Query 115758 TGGGATATCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCAT 115814
||||| | || || || || || ||| | || ||| || | | ||||||
Sbjct 52483 AGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCAT 52427
Query 115815 ATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAA 115870
| | | ||||| ||||| || | || |||| | | ||| | |||||||
Sbjct 52426 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAA 52371
Query 115871 CAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGC 115930
| |||||||| ||||| |||| | |||||||||| ||||| ||||| ||||
Sbjct 52370 CCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGC 52311
Query 115931 ACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGC 115990
|||| ||||| |||| || |||| || ||| || ||||| || || | ||| || |
Sbjct 52310 ACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGAC 52251
Query 115991 TGTTGCGGAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAG 116048
|||| |||| || | | | | | | || || | | |||||||| || |
Sbjct 52250 TGTTACGGATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTC 52193
Query 116049 CTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 116108
| || | | |||||| || |||||||||||||| | || || || || || |
Sbjct 52192 AGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTT 52133
Query 116109 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGC 116165
|| || || || ||||| ||| |||| | ||||| || |||||| ||
Sbjct 52132 GAAGGTAGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGC 52076
Query 116166 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 116225
||| || || ||||| || || | || | | ||||| || || || |
Sbjct 52075 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCCGGTGACTCGAAGGG 52016
Query 116226 GAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGAT 116284
| || || | || || |||| || || || || ||||| || ||||| || || |
Sbjct 52015 CATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGT 51957
Query 116285 GTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTAT 116344
| | ||| ||| || ||||| || || || || ||| |||||| | | | |
Sbjct 51956 GGCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGT 51897
Query 116345 TTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG 116404
| || || ||||||| ||| | || | ||| | | | || | || ||
Sbjct 51896 TCAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAG 51840
Query 116405 TCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCT 116461
||| || | ||| | || || || | || || || || || |||| | ||
Sbjct 51839 CCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 51780
Query 116462 CATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCA 116521
| || || |||||| |||||||| || |||| || || || ||||| || |
Sbjct 51779 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 51720
Query 116522 AGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCG 116581
||||||||| || ||| ||| || ||||||||||||||||| |||| | || |
Sbjct 51719 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 51660
Query 116582 TCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGT 116638
|||| || |||| || ||||| || | ||| | || | | || | | || | |||
Sbjct 51659 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG- 51602
Query 116639 TGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-C 116697
|| | ||||||| |||||||||| ||| || ||||| ||||| || || |||
Sbjct 51601 ACCCTTG-CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAG 51544
Query 116698 TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACC 116757
|| | ||| || || || | || || | || | ||| | ||| || |||||
Sbjct 51543 TCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACA 51484
Query 116758 CGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT 116817
||||||||||| || || |||||||| || || ||| || || || || | ||
Sbjct 51483 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCC 51424
Query 116818 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 116877
|| | || || || ||| | || | || || | || ||| | |||||| || ||
Sbjct 51423 TCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCG 51364
Query 116878 AGGTACACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGT 116933
||||| | || | | ||| | || | | ||| |||||| ||||| | || ||
Sbjct 51363 AGGTAGATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATAGCGAGCAGT 51305
Query 116934 TGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA- 116991
||| || || |||||||| |||| | ||| | ||| || || || || |||
Sbjct 51304 GTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGAT 51245
Query 116992 ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTT 117051
|| ||| | | || | || | ||| | || || ||||||||| || ||| |||
Sbjct 51244 GTAGGAGCC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTG 51187
Query 117052 GAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTT 117111
||||| || || | ||||| | ||||||| || || || ||| |||| |
Sbjct 51186 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 51127
Query 117112 GCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGT 117171
||| | |||||| |||| ||| ||| || || || ||||||||||| || ||
Sbjct 51126 TCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGA 51067
Query 117172 GTCGCGTGGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA 117229
| || || |||| | | || ||||||| | ||| ||||||||||| |
Sbjct 51066 GAAGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGA 51009
Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCA 117289
| || || || |||||| | || || ||||| | ||||| || || || | |
Sbjct 51008 TATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAA 50949
Query 117290 GGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344
|||| || | | | ||||||| |||||| ||||||| ||||| ||
Sbjct 50948 TCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 50894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613498541879640
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