Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1097 192 7e-44 seq192 154 2e-32 >seq1097 Length=481400 Score = 192 bits (212), Expect = 7e-44 Identities = 538/817 (66%), Gaps = 23/817 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 424585 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 424644 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 424645 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 424699 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 424700 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 424759 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || |||| ||| ||||||| || || || | ||| Sbjct 424760 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTAATGATA 424819 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | | | || ||| || ||| Sbjct 424820 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAGG--CAG-GCA 424876 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||| ||||| |||||||| || || |||||| |||||| ||| Sbjct 424877 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 424936 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 424937 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 424996 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| ||||| |||| ||||||| |||||||||| | ||| | | ||| Sbjct 424997 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 425056 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || || | ||||| || || | |||||| Sbjct 425057 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGG 425116 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822 | | | | || || |||||||| | || ||||| || || || ||| | Sbjct 425117 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAG 425176 Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 |||| | | ||| || | ||| | ||||||| | || || ||| ||||| || Sbjct 425177 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 425235 Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 ||| | | ||| | | || ||||| ||||| ||||| || |||| || | Sbjct 425236 CTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGA 425294 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997 | || ||||| | | ||| ||| |||| | ||| || | |||||||||| Sbjct 425295 AAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGT 425354 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||||| || ||||| | |||||| |||||||| Sbjct 425355 GGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 425391 >seq192 Length=101724 Score = 154 bits (170), Expect = 2e-32 Identities = 1167/1855 (63%), Gaps = 55/1855 (3%) Strand=Plus/Minus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | |||||||||| || || |||| || || ||||||||||| || ||| Sbjct 52722 TCAACGGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 52663 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACT 115637 ||||| || |||||||| | | || | ||||| || | |||| | || || Sbjct 52662 TTGAGGCCAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 52604 Query 115638 TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCAT 115697 | |||| || ||||| ||||| ||||| |||||| || ||||| || ||||| Sbjct 52603 CTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCAT 52544 Query 115698 ATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATC 115757 | || || | | ||| ||||| || || | || || ||| | ||| | Sbjct 52543 CTGAACGACCTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGC 52484 Query 115758 TGGGATATCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCAT 115814 ||||| | || || || || || ||| | || ||| || | | |||||| Sbjct 52483 AGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCAT 52427 Query 115815 ATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAA 115870 | | | ||||| ||||| || | || |||| | | ||| | ||||||| Sbjct 52426 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAA 52371 Query 115871 CAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGC 115930 | |||||||| ||||| |||| | |||||||||| ||||| ||||| |||| Sbjct 52370 CCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGC 52311 Query 115931 ACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGC 115990 |||| ||||| |||| || |||| || ||| || ||||| || || | ||| || | Sbjct 52310 ACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGAC 52251 Query 115991 TGTTGCGGAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAG 116048 |||| |||| || | | | | | | || || | | |||||||| || | Sbjct 52250 TGTTACGGATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTC 52193 Query 116049 CTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 116108 | || | | |||||| || |||||||||||||| | || || || || || | Sbjct 52192 AGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTT 52133 Query 116109 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGC 116165 || || || || ||||| ||| |||| | ||||| || |||||| || Sbjct 52132 GAAGGTAGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGC 52076 Query 116166 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 116225 ||| || || ||||| || || | || | | ||||| || || || | Sbjct 52075 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCCGGTGACTCGAAGGG 52016 Query 116226 GAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGAT 116284 | || || | || || |||| || || || || ||||| || ||||| || || | Sbjct 52015 CATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGT 51957 Query 116285 GTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTAT 116344 | | ||| ||| || ||||| || || || || ||| |||||| | | | | Sbjct 51956 GGCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGT 51897 Query 116345 TTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG 116404 | || || ||||||| ||| | || | ||| | | | || | || || Sbjct 51896 TCAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAG 51840 Query 116405 TCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCT 116461 ||| || | ||| | || || || | || || || || || |||| | || Sbjct 51839 CCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 51780 Query 116462 CATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCA 116521 | || || |||||| |||||||| || |||| || || || ||||| || | Sbjct 51779 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 51720 Query 116522 AGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCG 116581 ||||||||| || ||| ||| || ||||||||||||||||| |||| | || | Sbjct 51719 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 51660 Query 116582 TCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGT 116638 |||| || |||| || ||||| || | ||| | || | | || | | || | ||| Sbjct 51659 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG- 51602 Query 116639 TGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-C 116697 || | ||||||| |||||||||| ||| || ||||| ||||| || || ||| Sbjct 51601 ACCCTTG-CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAG 51544 Query 116698 TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACC 116757 || | ||| || || || | || || | || | ||| | ||| || ||||| Sbjct 51543 TCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACA 51484 Query 116758 CGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT 116817 ||||||||||| || || |||||||| || || ||| || || || || | || Sbjct 51483 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCC 51424 Query 116818 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 116877 || | || || || ||| | || | || || | || ||| | |||||| || || Sbjct 51423 TCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCG 51364 Query 116878 AGGTACACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGT 116933 ||||| | || | | ||| | || | | ||| |||||| ||||| | || || Sbjct 51363 AGGTAGATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATAGCGAGCAGT 51305 Query 116934 TGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA- 116991 ||| || || |||||||| |||| | ||| | ||| || || || || ||| Sbjct 51304 GTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGAT 51245 Query 116992 ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTT 117051 || ||| | | || | || | ||| | || || ||||||||| || ||| ||| Sbjct 51244 GTAGGAGCC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTG 51187 Query 117052 GAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTT 117111 ||||| || || | ||||| | ||||||| || || || ||| |||| | Sbjct 51186 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 51127 Query 117112 GCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGT 117171 ||| | |||||| |||| ||| ||| || || || ||||||||||| || || Sbjct 51126 TCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGA 51067 Query 117172 GTCGCGTGGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA 117229 | || || |||| | | || ||||||| | ||| ||||||||||| | Sbjct 51066 GAAGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGA 51009 Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCA 117289 | || || || |||||| | || || ||||| | ||||| || || || | | Sbjct 51008 TATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAA 50949 Query 117290 GGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 |||| || | | | ||||||| |||||| ||||||| ||||| || Sbjct 50948 TCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 50894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498541879640