Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq609 251 9e-62
seq631 163 4e-35
seq321 93.3 5e-14
seq729 86.0 8e-12
>seq609
Length=1472402
Score = 251 bits (278), Expect = 9e-62
Identities = 434/629 (69%), Gaps = 6/629 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || ||||| | ||||| || ||||||||
Sbjct 89982 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 89923
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | |||||||| || ||||||||||| || || || ||||| |||
Sbjct 89922 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 89863
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || |||||||| |||||||| || || || || || || || ||
Sbjct 89862 TTGCGCTCGCCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 89803
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || || || ||| ||| || || || || | ||||| || || ||||| ||
Sbjct 89802 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 89743
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| |||||||| |||||||| ||||| || || || |||| |||| ||| |||||
Sbjct 89742 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 89683
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || ||| | || ||| ||||| || | ||| | || ||||| || | |
Sbjct 89682 TAAGACTCAGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 89623
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
|| || || || || || || ||||| || || |||| ||| || | | |
Sbjct 89622 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 89566
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
| | ||| | | | | ||||| ||| | ||||||| | || | ||||| |
Sbjct 89565 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 89506
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
||||| | ||||| || || || || ||||| | |||||||||||| |||||||||
Sbjct 89505 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 89446
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || || || ||||| || | || || || ||||| | || ||||| |||
Sbjct 89445 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 89389
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085
|| || || |||||||| || || || ||
Sbjct 89388 CGGTTACCCTGGTCGTTGGCGATGATATC 89360
>seq631
Length=1118389
Score = 163 bits (180), Expect = 4e-35
Identities = 367/545 (67%), Gaps = 15/545 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| || ||||| ||||| | ||| || | |||||| | | ||
Sbjct 36107 AGGTCCTCGAAACGGGCGCGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 36048
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | ||| | || ||||| || |||||||| |
Sbjct 36047 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 35990
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| ||||| | ||| || |||||||| | | || || | || ||||| || ||
Sbjct 35989 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTCGTCTTTCGGC 35930
Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
||||| | | |||| |||| |||| | | |||||||| | |||||||||||
Sbjct 35929 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 35871
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
|| || || ||||| || ||||| |||| ||| || | ||||| | | || |||
Sbjct 35870 GTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 35811
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600
|| || ||||||||||| || || | ||||| ||||| || | ||| | ||||
Sbjct 35810 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 35754
Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|| |||||||| || || || || || || || || || || ||||| || |
Sbjct 35753 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 35694
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || || ||||| | | || || || || || || || || ||||| ||||||
Sbjct 35693 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 35634
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| ||||| || | ||| || | | ||| ||||| ||||| | | || || || ||
Sbjct 35633 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 35574
Query 7775 TTCAT 7779
|||||
Sbjct 35573 TTCAT 35569
>seq321
Length=894737
Score = 93.3 bits (102), Expect = 5e-14
Identities = 169/244 (69%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| |||||||| | || || || || ||||| || ||| || ||||||||
Sbjct 761486 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 761545
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| |||||| | | || ||||| || ||||||||||| || || | || |
Sbjct 761546 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 761602
Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
| || | ||| || | | | |||| || |||||||| |||||||| || || || || |
Sbjct 761603 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 761661
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || | || || ||| ||| || || ||||| | | ||||| || || || ||||
Sbjct 761662 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 761721
Query 7695 GTTG 7698
| ||
Sbjct 761722 GCTG 761725
>seq729
Length=6939
Score = 86.0 bits (94), Expect = 8e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763
|||||||||| | || || || ||||| ||||| ||||| ||||||||||| || || |
Sbjct 4196 CGTTAAAGTATGTGGGAACAGTGACGACGGCGTCTGTGACCTTCTTACCGAGGTAAGACT 4137
Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823
| |||| | ||||| ||| |||| ||| | |||| ||| |||| || |||||||
Sbjct 4136 CGGCGACCTGCTTCATCTTGCCTAGAATCATAGCAGAAACCTCCTCAGGTGCTAACTGTT 4077
Query 7824 TCGTTTCACCGT 7835
| | ||||||
Sbjct 4076 TGTCTGCACCGT 4065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635123836688360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |