Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq942 154 3e-32
seq221 138 3e-27
seq210 138 3e-27
>seq942
Length=1175861
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||||||||||||||| || ||||| |||||||| | ||||| | || || ||
Sbjct 559049 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 558990
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || ||||| || | ||||| ||||| || |||||||| || ||||| ||
Sbjct 558989 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 558930
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || |||||| || || || ||||| ||| || || || ||||| | |||||
Sbjct 558929 AATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 558870
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 558869 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 558840
Score = 134 bits (148), Expect = 3e-26
Identities = 165/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981
|||| | ||| ||||||||||| ||||| || || || ||||| ||| |||| || |
Sbjct 559795 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCG 559737
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| | ||||||||| ||||||||||| || ||||| || || ||||| || ||
Sbjct 559736 ACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTC 559677
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGG 195099
||||| ||||| || ||| ||||| || || |||| | | || || || ||||||
Sbjct 559676 CTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGAC--TCGACCTCAAGG 559619
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||||||| || | ||| || || || | |||||
Sbjct 559618 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 559578
>seq221
Length=632464
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||||||| ||||| |||||||||||||| ||||||||
Sbjct 151584 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 151525
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| |||||||| || |||||||| || ||||| || || || |||||| || ||
Sbjct 151524 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 151465
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
||||||||||| || || || ||||| | ||||| || |||| || || |||||
Sbjct 151464 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 151406
>seq210
Length=555789
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| ||| || || | ||||| |||
Sbjct 362868 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 362927
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| ||
Sbjct 362928 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 362987
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| ||| ||||| |||||||| | ||||||
Sbjct 362988 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 363047
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 363048 CCCGTGAGGGTCTTGACGAAAATCTGCAT 363076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109465551001943
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |