Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq942 123 2e-22 seq609 91.5 1e-12 >seq942 Length=1175861 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || || || || || | ||||| Sbjct 559571 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 559512 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||||||||||||| ||||| || || || || |||||||| |||||||| || Sbjct 559511 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 559452 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 559451 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 559393 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||| ||||| ||||| ||||| Sbjct 559392 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 559353 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 559343 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGT 559284 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| ||||||||||||||||| || || || || || |||||||| || || Sbjct 559283 TCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCC 559224 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| ||||||||| || ||| || || ||||| | | | | |||| Sbjct 559223 CTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGA-CCTCAA 559165 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || || || || || ||||| ||||| |||| Sbjct 559164 GAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 559132 Score = 100 bits (110), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| Sbjct 559733 ATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTT 559674 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || || || ||||| ||| || |||||||| || Sbjct 559673 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 559614 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| || ||||| || Sbjct 559613 GGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 559581 >seq609 Length=1472402 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || || || || || |||||||| |||||||| || || ||||| || | Sbjct 89712 TTACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCA 89771 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||||| || ||| | || || || || || || || || ||||| |||| || | Sbjct 89772 TCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACG 89831 Query 474864 GTCTTGATAAGAA 474876 ||||||||||||| Sbjct 89832 GTCTTGATAAGAA 89844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268130771712092