Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq192 181 3e-40 seq1097 149 2e-30 seq1086 111 5e-19 seq631 93.3 1e-13 >seq192 Length=101724 Score = 181 bits (200), Expect = 3e-40 Identities = 575/882 (65%), Gaps = 21/882 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 51766 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 51707 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 51706 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 51647 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 51646 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 51587 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 51586 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 51529 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | ||||| ||| | || || | | |||||| ||| || Sbjct 51528 CACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATGAAA 51472 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | |||| ||||| || ||||||||| | || |||||| | ||||| Sbjct 51471 AGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGG 51412 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || | ||||| || ||||| || || || ||| Sbjct 51411 TTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 51352 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | |||| |||||||| || ||||| |||||||| || ||||||||| Sbjct 51351 AAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 51292 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| || ||| || || || || ||||| ||| || | || |||| Sbjct 51291 CGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTA 51232 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | || | | || | | || ||||||||||| | |||| || || || || || Sbjct 51231 GCACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACA 51173 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAG---TAGATA 156277 ||| | ||||| | | || || |||||| || || | ||| || | ||| | Sbjct 51172 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCAT--ATCGACCAAGA-A 51116 Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337 ||| || ||||| || | || || || |||||||| || || || | ||||| | Sbjct 51115 GCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGT 51056 Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTG 156397 || | || | ||||| | |||||||||| | ||| | || | || Sbjct 51055 GAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCA 50996 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457 ||||| | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 50995 AATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 50936 Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 50935 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 50894 >seq1097 Length=481400 Score = 149 bits (164), Expect = 2e-30 Identities = 422/644 (66%), Gaps = 6/644 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || ||| ||| || || | ||||| |||||| || ||||| || || | Sbjct 425225 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 425166 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || || ||||| || |||||||| || ||| |||| | | || || |||| Sbjct 425165 ACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTTAACG 425106 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || |||| || || |||||| | |||||||| || |||||||||| Sbjct 425105 CCATT-GAGACCATTCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAG 425047 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | ||||| ||||||||||| || |||| || ||||| || || Sbjct 425046 GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTC 424987 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||||||||| ||| |||||| || ||||| || ||||||||| | | || || ||| Sbjct 424986 TTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTG 424927 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 || || ||||| || || || | || |||| |||||||| || |||||| | Sbjct 424926 ACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTC 424867 Query 133664 CTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAA 133723 || ||||| | | || | | || ||| | | ||| | || || |||| || Sbjct 424866 CTCCACTCCCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGATATCATTACTGAC 424807 Query 133724 GCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGCCGTTTAATTGGTA 133781 || || |||||| || || ||| | ||||| || ||||| || | || | Sbjct 424806 GCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTT--CTCGGCA 424749 Query 133782 TGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGT 133841 |||| || || ||| ||| || ||||| || || ||||| | | || | Sbjct 424748 TGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGC 424689 Query 133842 TAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCA 133901 | || || ||| ||||| || |||| || ||||||| ||||||| ||| | Sbjct 424688 TTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCC 424629 Query 133902 TTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 ||| ||||| || ||||||||| | | || ||||| ||| Sbjct 424628 TTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 424585 >seq1086 Length=725975 Score = 111 bits (122), Expect = 5e-19 Identities = 392/600 (65%), Gaps = 38/600 (6%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 124384 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 124443 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | |||||||||||||| |||||||| ||||| Sbjct 124444 TCCTTCAGGAAAGCAGCGGCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 124503 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | | Sbjct 124504 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 124561 Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||| | ||||| || ||| || | ||||| || |||||||||||| Sbjct 124562 GACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 124617 Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696 | | || |||| ||| | || || | || || | |||||| || |||| || Sbjct 124618 TAGGTAGGTCCGAAGAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCGTTGTA 124673 Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755 ||| || ||| || ||||| ||||| | ||| ||| |||| | || Sbjct 124674 CATGACCTCGAAACCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 124728 Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809 |||| || | || | | || ||| |||| || | | ||| | | Sbjct 124729 GAATC--GACTGTGACATCAGTGAACGGTGTGGCGTCACCCTCCATACCTTCCAGCGTTG 124786 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | || |||| | ||| ||| ||| ||||| || ||||| || ||||| || | Sbjct 124787 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGATGGAATGGCGT 124846 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | || ||||||||||| ||||| | || || || |||| |||||||||| | | Sbjct 124847 GAGGGTTGATGATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 124905 Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||| || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 124906 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 124964 >seq631 Length=1118389 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 9064 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 9008 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 9007 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCTAGA 8948 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 8947 ACACCAACCATTTCACCAGG 8928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471796309698473