Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1097 159 5e-33
seq192 132 8e-25
seq69 111 2e-18
seq820 98.7 2e-14
seq343 86.0 1e-10
>seq1097
Length=481400
Score = 159 bits (176), Expect = 5e-33
Identities = 234/328 (71%), Gaps = 5/328 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||| | |||||| ||| || ||||||||||| || |||||
Sbjct 424891 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 424950
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||| | ||| || ||| ||||| ||||| || || || ||
Sbjct 424951 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 425010
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | ||||| |||| |||||| | | | ||| | | |||||| || |||||
Sbjct 425011 GGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 425067
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578
|| ||||| || | | |||| | || || |||||| |||||||| ||| | ||
Sbjct 425068 GTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGTTCG-CT 425126
Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638
| | || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| |
Sbjct 425127 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 425186
Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || |||||||||||| || |||||
Sbjct 425187 CCATCATGATCTGGAAGCCGTAGAAGCA 425214
Score = 113 bits (124), Expect = 7e-19
Identities = 180/257 (70%), Gaps = 1/257 (0%)
Strand=Plus/Plus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
||| || ||||| || ||| | || ||| |||||| |||||||||||||| | ||
Sbjct 424570 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 424629
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011
||||| |||||| | ||| ||||||| | | ||| ||||||| || ||
Sbjct 424630 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAG 424689
Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071
|| |||| || || || |||||||| ||||||||||| ||||||| | | ||||||
Sbjct 424690 CGCGACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 424749
Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
||||| || || ||| || | ||| ||| ||||| | ||| || |||||| ||
Sbjct 424750 GCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTC 424809
Query 794132 GATGATGATCTGCCTGG 794148
| ||||| | |||||
Sbjct 424810 AGTAATGATAT-CCTGG 424825
>seq192
Length=101724
Score = 132 bits (146), Expect = 8e-25
Identities = 184/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| ||||| || ||||| || |||| ||||| ||
Sbjct 51325 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 51266
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || || | ||||| ||| | || || | |||| || | ||
Sbjct 51265 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 51206
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| || || ||| ||||||||| | || || | || || || |||||||| |||||
Sbjct 51205 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 51146
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| ||||||| || | || ||||| || || ||| || | | |||||
Sbjct 51145 AATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 51086
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||| ||||||||||||||
Sbjct 51085 GGCGTTGAAGAGCGTGGG 51068
>seq69
Length=252342
Score = 111 bits (122), Expect = 2e-18
Identities = 91/111 (82%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||| ||||| || || ||| | || |||||||| || || ||| | |
Sbjct 212395 CCAACTACCTCGACATTAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCGAACATGA 212454
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
||||||||||||| ||||| || ||||||||||| || ||||| | | |||
Sbjct 212455 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 212505
>seq820
Length=734298
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 9989 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 9930
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | ||||||||||| ||||
Sbjct 9929 GATGAGGCGGACAGAAGTCTGGATCTCTCGGG 9898
>seq343
Length=1344377
Score = 86.0 bits (94), Expect = 1e-10
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263
|| ||||| || | | ||||||||||| |||||| || | || |||| || |||||
Sbjct 499933 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 499992
Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323
||||| || || ||||| | ||| ||||||| || || || || | |||||||||
Sbjct 499993 GCCCTTAGACGAACTATGGAGATCTACTCCAACACTACACGATTCGCTTTTGCCTGCAAC 500052
Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368
||| | | |||||||| ||||||| || |||||||||
Sbjct 500053 CAGTCCAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATC 500097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916126303120631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |