Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq210 122 6e-23 seq942 116 2e-21 seq221 98.7 6e-16 >seq210 Length=555789 Score = 122 bits (134), Expect = 6e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 362865 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 362924 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 362925 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 362984 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 362985 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 363040 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| || || |||||||| Sbjct 363041 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 363076 >seq942 Length=1175861 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||| ||||| ||||| | | |||| |||| Sbjct 559789 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 559730 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||| || || || || || | || | ||||||||||| Sbjct 559729 TCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCC 559670 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| ||| |||||| |||| ||| |||||| Sbjct 559669 TGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTC 559610 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| ||||| |||||||| Sbjct 559609 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 559578 Score = 114 bits (126), Expect = 8e-21 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||||||||| || || || || |||| | || Sbjct 559051 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 558992 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| ||||||||||| | || | ||||||||||| Sbjct 558991 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 558932 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 558931 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGAT 558876 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||| || || | |||||| || |||||||||||||| Sbjct 558875 GGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGAT 558837 Score = 105 bits (116), Expect = 4e-18 Identities = 147/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||||||||| ||||| | ||| | || | || Sbjct 559333 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 559274 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || |||||||| || |||||||| | || | ||||||||||| Sbjct 559273 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 559214 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| || || || | ||||| || | |||||| |||| || || Sbjct 559213 TGAATCTTTGACTTAAC--AT--TGTCGATGGTATCGGACGACTCGACCTCAAGAGTGAT 559158 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 |||||| || ||||||||||| || Sbjct 559157 GGTCTTGCCAGTGAGGGTCTTGAC 559134 >seq221 Length=632464 Score = 98.7 bits (108), Expect = 6e-16 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| || || ||||| || ||||||| Sbjct 151586 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 151527 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||||||| || ||||| | || | ||||||||||| | || || ||||| || Sbjct 151526 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 151470 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| || | ||| |||||||| ||||| |||||||| Sbjct 151469 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 151411 Query 34964 ACAAA 34968 || || Sbjct 151410 ACGAA 151406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688318568851