Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq609 109 4e-18 seq631 96.9 3e-14 >seq609 Length=1472402 Score = 109 bits (120), Expect = 4e-18 Identities = 198/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || || ||||| ||||| ||||| | ||| | || | |||| | || Sbjct 89994 ACCAGACGGTTGTCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 89935 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | | |||| |||||| ||| |||||||| | ||| Sbjct 89934 TCGAAGATACCCTCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCG 89875 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || ||||||||||| || |||| || ||| Sbjct 89874 AAGATGAGGACGTTGCGCTCGCCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCGGCA 89815 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||| || || || || |||| | ||| || ||||| || || || ||||| || Sbjct 89814 GCAGTAGGCTCGTTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTG 89755 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || ||||| | || |||||||| || || || || ||||||| ||| || Sbjct 89754 GTAGCTTGACGCTGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGC 89705 >seq631 Length=1118389 Score = 96.9 bits (106), Expect = 3e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| || |||||| || |||| || |||||||| ||||||||||| | || |||||| Sbjct 6738 GGTAAGGAGGGTCGTCTTCGAGGTAACTTGATGGGTAAGCGTGTCGACTTTTCGGCACGT 6797 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || |||| | || || |||||||| | || |||| Sbjct 6798 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACACGAGGTCGGTGTTCCACGCAGTATT 6857 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACA 432440 || | | || || | | ||||| ||| ||| Sbjct 6858 GCCAGGACCCTCACCTATCCCGAAACTGTGACA 6890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740574970871154