Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq942 150 4e-31 >seq942 Length=1175861 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||||||||| ||||| || || || || | Sbjct 559578 TACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGG 559519 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| || ||||| ||||| || ||||| ||||| |||| |||||||| |||| Sbjct 559518 AAAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAG 559459 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||| ||||| || ||||| ||||| ||||| | || Sbjct 559458 GAATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCG 559400 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||| || ||||| || || | ||||| || || || ||||| Sbjct 559399 ACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 559350 Score = 116 bits (128), Expect = 7e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| ||||| || || || || | || ||| |||||||| ||||| Sbjct 559324 TGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGC 559265 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| || | || || || ||||| || || ||||| || ||||||||| Sbjct 559264 TTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTT 559205 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||| || || ||||| | || || || | ||| || |||||||| || Sbjct 559204 GACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTG 559145 Query 82788 AACGTCTTTACAAATAT 82804 | ||||| || | ||| Sbjct 559144 AGGGTCTTGACGACTAT 559128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981812997562731