Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq942 116 9e-21
>seq942
Length=1175861
Score = 116 bits (128), Expect = 9e-21
Identities = 159/220 (72%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TG 206230
||||| ||| || || ||||| ||||| || ||||| | || || || || | ||
Sbjct 559581 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA--GTCCAGTG 559638
Query 206231 ACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290
|||| |||| || ||| |||||||| || || || || ||| || || |
Sbjct 559639 ACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAAC 559698
Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350
| | ||||||||||| || ||||||||||||||||| | || ||| ||| ||||||
Sbjct 559699 AGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAACA 559758
Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||| ||||| ||||||||||| ||| | |||||||
Sbjct 559759 TCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 559798
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||| | ||| ||||||||||| ||||| ||||||| || ||||| ||| ||
Sbjct 559798 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 559739
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| |||||||||| |||||| || ||||||||||| || ||||||
Sbjct 559738 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGA 559694
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || || || || ||||| | || || || ||| |||
Sbjct 558843 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 558902
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || ||| || ||| |||
Sbjct 558903 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAA 558962
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | || |||||||| |||||| | || || || | ||| | | ||||||||| |
Sbjct 558963 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 559022
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| ||||| |||||||||||||||
Sbjct 559023 CAGAAGGAGTCCACTCTTCACCTTGTT 559049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181803704592809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |