Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq192 199 5e-46 seq1097 188 9e-43 seq332 84.2 3e-11 >seq192 Length=101724 Score = 199 bits (220), Expect = 5e-46 Identities = 1170/1849 (63%), Gaps = 43/1849 (2%) Strand=Plus/Minus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | |||||||||| || || |||| || || ||||||||||| || ||| Sbjct 52722 TCAACGGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 52663 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACT 117916 ||||| || |||||||| | | || | ||||| || | |||| | || || Sbjct 52662 TTGAGGCCAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 52604 Query 117917 TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCAT 117976 | |||| || ||||| ||||| ||||| |||||| || ||||| || ||||| Sbjct 52603 CTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCAT 52544 Query 117977 ATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATC 118036 | || || | | ||| ||||| || ||| | || || ||| | ||| | Sbjct 52543 CTGAACGACCTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGC 52484 Query 118037 TGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATC 118096 ||||| | || || || ||||| ||| | | | ||| | | ||||||| | Sbjct 52483 AGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGC 52424 Query 118097 CTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAA 118156 | ||||| ||||| || | || |||| | || |||||||| || Sbjct 52423 ATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAA 52364 Query 118157 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 118216 |||||| ||||| |||| | ||||| |||| ||||| ||||| |||||||| || Sbjct 52363 CTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 52304 Query 118217 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 ||| |||| || |||| || ||| || ||||| || || | ||| || |||||||| Sbjct 52303 GTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 52244 Query 118277 GAGACCCTTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTC 118334 || || | | | | | | | | || || ||| |||||||| || | | | Sbjct 52243 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 52186 Query 118335 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 118394 | | | |||||| || |||||||||||||| | || || || || || | || || Sbjct 52185 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTA 52126 Query 118395 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 118451 || || ||||| ||| |||| | ||||| || |||||| ||||| || Sbjct 52125 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAA 52069 Query 118452 ATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 || || || || || | || | | ||||| || || || | | || Sbjct 52068 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCG- 52010 Query 118512 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 || | || || |||| || || || || ||||| || ||||| || || || | ||| Sbjct 52009 CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCAT 51950 Query 118571 ATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 ||| || ||||| || || || || ||| |||||| | | | || || || Sbjct 51949 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 51890 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 ||||||| ||| | || | ||| | | | || | || || ||| || Sbjct 51889 GCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATC 51833 Query 118691 AT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 | ||| | || || || | || || || || || |||| | ||| || Sbjct 51832 GTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGG 51773 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || |||||| |||||||| ||||||| ||| || || ||||| || | |||||| Sbjct 51772 GGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 51713 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||| || ||| ||| || ||||||||||| |||||| |||| | || ||||| || Sbjct 51712 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 51653 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGC 118925 |||| || ||||| || | ||| | | ||| || | | ||| || | Sbjct 51652 CTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG-ACCCTTG- 51595 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| | |||||||||| ||| || || || ||||| || || | || | ||| Sbjct 51594 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 51535 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || || || | ||||| | || | ||| | ||| || ||||| ||||||||| Sbjct 51534 CCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATG 51475 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 || || || |||||||| || || ||| || || || || | || || | || Sbjct 51474 AAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCG 51415 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || ||| | || | || || | || ||| | |||||| || || ||||| | Sbjct 51414 TGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATG 51355 Query 119166 GCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 || | | || | ||| | | ||| |||||| ||||| | |||||| ||| Sbjct 51354 GCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTG 51298 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAG 119277 || ||||||||||| |||| | ||| | ||| || || || || ||| || ||| Sbjct 51297 AAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAG 51238 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 | | | || | || | ||| | || || ||||||||| || ||| ||| ||||| Sbjct 51237 CC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCA 51180 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || || | ||||| | ||||||| || || || ||| |||| | ||| | Sbjct 51179 TGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCGACCA 51120 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 |||||| |||| ||| ||| || || || ||||||||||| || || | || | Sbjct 51119 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCAT 51060 Query 119458 GGATGAACA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTT 119514 | |||| | | || ||||||| || ||| ||||||||||| || | || || | Sbjct 51059 GTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCAT 51003 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 119574 | || |||||| | || || ||||| | ||||| || || || | | ||| Sbjct 51002 CACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTAC 50943 Query 119575 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | || | | | ||||||| |||||| ||||||| ||||| || Sbjct 50942 CGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 50894 >seq1097 Length=481400 Score = 188 bits (208), Expect = 9e-43 Identities = 536/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 424586 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 424645 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || ||| | || | |||| | |||||||| Sbjct 424646 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-CCAAGCGCGACAAGGAGACG 424704 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| ||| ||| Sbjct 424705 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACA 424764 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 424765 GGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTAATGATATCCTG 424824 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | | | || ||| || |||||| || Sbjct 424825 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAGG--CA-GGCAAAGTC 424881 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| |||||||| || || |||||| |||||| |||||||| Sbjct 424882 AGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 424941 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 424942 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 425001 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||||| ||||||||| | ||| | | ||| || Sbjct 425002 AGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 425061 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || || | ||||| || || | |||||| | | Sbjct 425062 GGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGT 425121 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || |||||||| | || ||||| || || || ||| |||| Sbjct 425122 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 425181 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 425182 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 425239 Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | | ||| | | || ||||| ||||| ||||| || |||| || || || Sbjct 425240 CCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCA 425299 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 ||||| | | ||| ||| |||| | ||| || | |||||||||| ||| Sbjct 425300 AGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGA 425359 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| || ||||| | |||||| |||||||| Sbjct 425360 TCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 425391 >seq332 Length=2001134 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 1781652 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 1781711 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || || ||| |||| || ||| | | || | |||||||||||| Sbjct 1781712 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCAGGAATGTAGATCTTCTCCTTTTCGTG 1781771 Query 180999 CATA 181002 ||| Sbjct 1781772 AATA 1781775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618426472333240