Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq192 223 4e-53
>seq192
Length=101724
Score = 223 bits (246), Expect = 4e-53
Identities = 520/775 (67%), Gaps = 22/775 (3%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | ||||| ||||| || | ||| |||
Sbjct 50960 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 51019
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||| ||| || | ||| | || | ||| || || || | || || || |||
Sbjct 51020 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCTTCTCCCACGCTCTTC 51079
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || || ||| || || |||| |||||| |||| | |||||||| |||
Sbjct 51080 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGATATGAAGGACGAC 51139
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| || || |||||||| || |||||| |||||| ||||||||| | | |||
Sbjct 51140 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 51199
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||| ||| | || ||| | | | ||||||| | ||| | ||| || || |
Sbjct 51200 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATCGCCGGTACCA 51257
Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|||| | ||| | || | || |||||||| || |||||||||||||| || || ||
Sbjct 51258 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 51315
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| |||||||||| ||||| || | || ||||||||||||||||| |||||
Sbjct 51316 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 51375
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
| | || | | ||||| || || || ||| ||| || ||| | || ||| | ||
Sbjct 51376 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 51435
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||| || || || ||||| || || || |||||| | || || ||| |
Sbjct 51436 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 51495
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774
|| || ||| ||||||||||| ||||||||||| |||||| | | || |||||| |
Sbjct 51496 CGGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAG 51554
Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828
||||||| | | |||| | |||| | || | |||| ||| ||||
Sbjct 51555 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 51608
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
||||||| | | | ||| | || || || || |||| ||||| |||| |
Sbjct 51609 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 51668
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| | |||| |||||||||| | |||| ||||||||||| |||||| ||||
Sbjct 51669 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 51723
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | ||
Sbjct 52549 TGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 52608
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| ||| |||| | | | ||||||||| || |||||| || |||||||| ||
Sbjct 52609 CACGATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGCCTCAAGACTGG 52668
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 52669 CATGTACTACCTTCGTAC 52686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547208277414200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |