Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq192 297 2e-75
seq942 181 1e-40
seq210 161 1e-34
seq221 123 3e-23
seq1097 113 5e-20
>seq192
Length=101724
Score = 297 bits (328), Expect = 2e-75
Identities = 1146/1767 (65%), Gaps = 69/1767 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| ||||||||| | ||||
Sbjct 52692 GCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCAGCCTGCAAAGTGC 52633
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
||| ||| ||| | | ||||||| || |||| ||||||||| ||||| ||||||
Sbjct 52632 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 52573
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210
||||| || || ||||| || ||||| | || | || | | | | || |||||
Sbjct 52572 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATCTCCCA 52514
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || ||||| |||| | || | || |||| || | | | | ||
Sbjct 52513 AACGGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 52457
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||| | || |||| | || |||| || | ||| | ||| | | | ||
Sbjct 52456 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 52397
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
|| || | || | | ||| || | || |||| || ||||| || || |
Sbjct 52396 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGTCGTTG 52340
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || ||||||||| || || ||||| | || ||
Sbjct 52339 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 52280
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | | | ||| || || | |||||| |||||| |||||
Sbjct 52279 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 52220
Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| | | || | ||| | ||| | ||| |||| |||||||||| |
Sbjct 52219 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 52165
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| ||||| || || || || || ||| || ||| || |||||| |||
Sbjct 52164 TGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTAGAGTAGGGACCCTCCTCCTTA 52105
Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672
||||||| |||| || | ||||| ||||| |||||| ||| |||| ||||||
Sbjct 52104 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTT 52046
Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732
| | || |||| || ||||| | || || || | ||| | || || ||
Sbjct 52045 GAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAG 51986
Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791
||||||||| || | | || || ||||||||| |||| | | || | ||||| | |
Sbjct 51985 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 51927
Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851
||||| ||| |||||||| |||||||||||| ||||||| | | || |
Sbjct 51926 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCT 51867
Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905
|| | |||| |||||| | | || | || | || | || || ||
Sbjct 51866 TGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 51807
Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962
| || || || ||||| || || ||||| |||| || | ||| ||| | ||||| |
Sbjct 51806 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCAATAATTTCAG 51750
Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020
|||||| || || ||| || ||||| ||||| || ||||| |||| ||||||
Sbjct 51749 TGCACAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 51692
Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080
|| ||||||||| |||| | ||| | |||||||| ||| | || || |||||||
Sbjct 51691 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 51632
Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140
||||| | | ||||||| |||||| ||||| || | | ||||| ||||
Sbjct 51631 CCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 51572
Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199
| ||||||| | |||| | ||| | | |||| | ||||||||||| |||||||
Sbjct 51571 CAGAGCCTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACA 51513
Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259
|||| |||||| || || || ||| |||||||||| ||||||||||| ||||
Sbjct 51512 TCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 51453
Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319
|| ||| ||||| ||| || ||||||| | ||| ||||| || | || || |
Sbjct 51452 CGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGA 51393
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373
| || | || || | ||||| ||||| || || | ||| | | || | ||||
Sbjct 51392 ACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 51334
Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
||||||||||| ||| || || ||||| ||| || ||||| | |||||| | |
Sbjct 51333 --TTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 51276
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491
||| | || |||||| ||||| |||| || || | || || || |||
Sbjct 51275 CACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCA 51216
Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551
|| ||||| || ||||| | | ||| || ||| ||||| || | || ||
Sbjct 51215 CGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 51158
Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611
|| |||||||| || || || | ||||| || | |||||| || ||||| || ||
Sbjct 51157 GTAGATTCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTG-GG 51099
Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670
||| | |||||| ||||| || || || | || || |||| | | | ||||
Sbjct 51098 GCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACA 51039
Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
|||||| || || ||| ||| || ||||| ||||| |||||| | || ||||
Sbjct 51038 TCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACAC 50979
Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756
|||| | ||||| ||| ||||| ||||
Sbjct 50978 GCATGATCATGTGCTGAGGGCG-CTCG 50953
>seq942
Length=1175861
Score = 181 bits (200), Expect = 1e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| |||| ||| |
Sbjct 559134 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 559193
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| || ||||| ||||||||||| || ||
Sbjct 559194 AATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 559253
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||||||||| || | || ||||| || ||||| || | || ||||||
Sbjct 559254 TTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 559313
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || |||||||| ||| | || || || |||||
Sbjct 559314 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 559348
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || ||||| |||||||| || || ||||||
Sbjct 559350 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 559409
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||| || || |||||||||||||| |||||||| || ||
Sbjct 559410 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 559469
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| |||||||| || |||| || || || | ||||| ||
Sbjct 559470 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 559529
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||| ||||| || | || | |||||||| |||||
Sbjct 559530 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 559576
Score = 167 bits (184), Expect = 3e-36
Identities = 177/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| ||||| || ||||| ||||| || || |||||||| ||||| ||
Sbjct 559578 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 559637
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| || ||||||||||||||||| ||||| || || ||
Sbjct 559638 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAA 559697
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| ||
Sbjct 559698 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 559756
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || |||||||| || || | || ||||||||||| ||
Sbjct 559757 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGGCCA 559807
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| | ||||||||||| || || || |||||||||||
Sbjct 558837 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 558896
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | ||| | ||| | || ||||||||||||||||| ||||| || |||
Sbjct 558897 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 558956
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| || | ||||| || || ||||| || ||||| | || || || | || ||
Sbjct 558957 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 559016
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || ||||| ||||||||||| || || | || || || |||||
Sbjct 559017 AACATTCAGAAGGAGTCCACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 559066
>seq210
Length=555789
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 363076 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 363017
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||| || || || ||||||
Sbjct 363016 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 362957
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 362956 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 362898
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || || || |||||
Sbjct 362897 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 362850
>seq221
Length=632464
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || || ||||| ||||| || | |||
Sbjct 151406 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 151465
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| ||
Sbjct 151466 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 151525
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||||||||| |||||||||| || || || | ||||| || |||| |||
Sbjct 151526 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 151585
Query 27595 G 27595
|
Sbjct 151586 G 151586
>seq1097
Length=481400
Score = 113 bits (124), Expect = 5e-20
Identities = 149/206 (72%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719
|| ||||| || ||||||||||| ||||| | || | || || |||| ||||||
Sbjct 425079 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 425020
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|||| || || || ||| || || || ||||| ||| | ||| ||||| |||
Sbjct 425019 CTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 424960
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| || || ||||| |||||| | || || |||||||| ||||||||
Sbjct 424959 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 424900
Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865
|| ||||| || ||| || |||||
Sbjct 424899 GATGAGGGTCTTCACACTGACTTTGC 424874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570302351494480
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