Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq210 150 4e-31
seq221 145 2e-29
seq942 143 6e-29
>seq210
Length=555789
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 363073 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 363014
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 363013 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 362954
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| |||||| | || || ||| || ||| ||
Sbjct 362953 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTACAACATC 362894
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 362893 CAGAAGGAGTCCACCCTCCACCTGGT 362868
>seq221
Length=632464
Score = 145 bits (160), Expect = 2e-29
Identities = 140/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || ||| ||||||||
Sbjct 151405 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 151464
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || |||||||| || |||||
Sbjct 151465 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 151524
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| ||
Sbjct 151525 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 151584
>seq942
Length=1175861
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||| || ||||| || || || |||||||
Sbjct 559132 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCG 559191
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || || || ||||||||||||||| || || |||||||| |||||||| || || |
Sbjct 559192 ACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGA 559251
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || ||||| || |||||||| || | || |||||||| || ||| | || || |
Sbjct 559252 TCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGG 559311
Query 178111 AATCAACACTGCATCTTGT 178129
|||| || || ||||| ||
Sbjct 559312 AATCTACCCTTCATCTCGT 559330
Score = 134 bits (148), Expect = 3e-26
Identities = 161/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| ||||| |||||||| ||||| || |||||||| ||||| || | |||
Sbjct 559581 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGTGAC 559640
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || || || || || || || ||
Sbjct 559641 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAACAG 559700
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| ||||||||||| || || ||| | |||||||| | || |||| ||| || ||| |
Sbjct 559701 CGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCAC-CTTGAGCGACTACAACAT 559759
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||| || || ||||| || || || ||| | ||||
Sbjct 559760 CCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 559795
Score = 125 bits (138), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || |||||||||||||| || || |||
Sbjct 558843 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 558902
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || || || || |||||||||
Sbjct 558903 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAA 558962
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| || ||||| || || || | ||||| | ||||| ||| |
Sbjct 558963 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 559022
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || || ||||||
Sbjct 559023 CAGAAGGAGTCCACTCTTCACCTTGTT 559049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203713787652026
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |