Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq942 143 2e-29
seq210 143 2e-29
seq221 129 5e-25
>seq942
Length=1175861
Score = 143 bits (158), Expect = 2e-29
Identities = 186/251 (74%), Gaps = 7/251 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||||||||| || || |||
Sbjct 559066 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 559007
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||||||||| |||| ||| || ||||| | ||||
Sbjct 559006 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 558947
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||||| ||| | || | ||| || | || | ||||||| |||||
Sbjct 558946 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGACTCA 558890
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATG 41872
||||| | || || || || || |||| ||||| ||||| ||||||||| | || |
Sbjct 558889 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATGGCGGT- 558831
Query 41873 GATCTCGCGCG 41883
||||| ||||
Sbjct 558830 GATCTGTCGCG 558820
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | || || || || || ||||||||| ||||| ||||||
Sbjct 559805 GCCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCT 559746
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || | |||||| || ||||| || || |||||||| || | |||
Sbjct 559745 CAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 559686
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | |||||||||| || || ||||| || | | | |||||| || ||||| |
Sbjct 559685 AATACCCTCCTTGTCCTGAATCTTGCTCTTCA-CGTTGTCGATAGTGTCACTGGACTCGA 559627
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| || |||||||||||
Sbjct 559626 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 559578
Score = 111 bits (122), Expect = 1e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || || |||||||||||||| |||||||
Sbjct 559348 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 559289
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||| ||||| || || || ||||||||||| ||||| | ||
Sbjct 559288 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 559229
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | |||| | ||| | | | || ||| |||||| ||
Sbjct 559228 ATGCCCTCCTTGTCC-TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 559170
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || || || ||||| ||||
Sbjct 559169 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 559132
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || |||||||||||||| ||||||||
Sbjct 559576 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 559517
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || || |||||||| ||||| || || |||||||| || | |||
Sbjct 559516 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 559457
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||||| | | | | || ||| ||||| ||
Sbjct 559456 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCA-ATGGTATCGGATGACTCGAC 559398
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || || || ||||| ||||| || |||||
Sbjct 559397 TTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 559350
>seq210
Length=555789
Score = 143 bits (158), Expect = 2e-29
Identities = 172/232 (74%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||||
Sbjct 362850 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 362909
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| || || || || ||||| ||||| | |||
Sbjct 362910 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 362969
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 362970 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 363027
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| | || ||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 363028 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 363079
>seq221
Length=632464
Score = 129 bits (142), Expect = 5e-25
Identities = 140/184 (76%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||| || || | || ||||||||||| || ||||| |
Sbjct 151586 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 151527
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||| ||||||||||||| ||||| || |||||||||| ||| || ||| || |
Sbjct 151526 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 151467
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || || |||||||| ||||| ||
Sbjct 151466 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 151409
Query 41851 GAAA 41854
||||
Sbjct 151408 GAAA 151405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462297475734800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |