Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515
.1_202016-08-10] 1,325 sequences; 51,394,345 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1216 289 3e-73
seq909 145 7e-30
seq685 114 1e-20
seq473 107 2e-18
>seq1216
Length=971295
Score = 289 bits (320), Expect = 3e-73
Identities = 638/954 (67%), Gaps = 2/954 (0%)
Strand=Plus/Plus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || |||||||| || |||||| | |||||| || ||
Sbjct 776432 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCAC 776491
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || | |||||||| || || ||||| | ||||
Sbjct 776492 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 776551
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || ||||| ||| | ||| | || || ||| |
Sbjct 776552 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGT 776611
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | | ||| || ||| ||| || | ||||||||||| ||||| ||
Sbjct 776612 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 776670
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || | ||||| |||||||| ||||| || | | | || ||||| || |
Sbjct 776671 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGT 776730
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || |||||||| || |||| |||||||| || ||||| || ||| |||
Sbjct 776731 CCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 776790
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
|| || ||||| || ||||||||||| ||| |||||| | ||| | || || ||
Sbjct 776791 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 776850
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
|| || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| ||
Sbjct 776851 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 776910
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || || || ||||||||| | || | ||||| || || | |||||| ||
Sbjct 776911 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 776970
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| ||| || || | || || | || || | ||| |||| | |||
Sbjct 776971 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 777030
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| || || || ||||| |||||||| |||||
Sbjct 777031 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 777090
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
|| ||||| || || | | |||||||| || || |||| ||| | | || || |
Sbjct 777091 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 777150
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
||| ||| || || || ||| || || ||| || | ||||| || ||||| ||
Sbjct 777151 GGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGT 777210
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|| | | | || || || || || ||||| | | || ||||| |||||||
Sbjct 777211 CTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTG 777270
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
||||| | |||||| | |||| ||| |||| || ||||| || | || || ||
Sbjct 777271 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 777330
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
|| ||||| || | || | || || || || | || ||||| || | |||
Sbjct 777331 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 777384
>seq909
Length=86681
Score = 145 bits (160), Expect = 7e-30
Identities = 463/708 (65%), Gaps = 20/708 (3%)
Strand=Plus/Plus
Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755
|| |||||||| || || ||||||||||| |||||||| | ||||| ||||
Sbjct 36388 GCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 36447
Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815
|| || || | | ||||| | ||||| ||||| || || | || || ||| |
Sbjct 36448 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 36507
Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG-AAACG 57874
|| || || | || || || ||||| || || ||| | ||||| || | || |||
Sbjct 36508 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 36567
Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934
|| || || ||||| || || || || ||| ||| |||||||| || ||| | ||
Sbjct 36568 TA-CCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 36626
Query 57935 CAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991
| |||||| | | | || || | || ||| || | || | || ||||| ||
Sbjct 36627 CCGATGGATCCA---GGATAAGGACTCCTCATTTGCCCAGCGTCTCGTTGCTTTCGCTGC 36683
Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051
|| || ||||| ||||| || ||| || | || || ||| | ||||| || ||
Sbjct 36684 TGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 36743
Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111
|| |||||||| ||||| || ||||||| | || || || || |||||||| || ||
Sbjct 36744 TCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACAC 36803
Query 58112 TGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACGCGGGATCGCA 58167
||| ||||| ||||| | |||||||| | ||| | | | || ||| |
Sbjct 36804 TGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-AAGC-AGAT--GA 36859
Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227
|| ||| || || || || || ||| |||| || | ||||| |||| || || || |
Sbjct 36860 TCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTC 36919
Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287
| ||| | ||||| |||||| ||| | ||| ||||||||||||| || || |
Sbjct 36920 CCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 36979
Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345
| | || | ||| || | |||| || |||||| | | || || || ||
Sbjct 36980 ATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGT--TTACAAGGCCACCAACCCCTTCGA 37037
Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
|| ||| | ||||| || | |||||||| ||||| ||||| ||
Sbjct 37038 CTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAA 37085
>seq685
Length=386754
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | ||
Sbjct 373834 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 373775
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 373774 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 373715
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || | || ||||| ||||| ||| | || ||| ||| | ||||| ||
Sbjct 373714 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 373655
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || || |||||||| || || ||
Sbjct 373654 CATTCAGAAGGAGTCCACTCTTCACCTTGTTCT 373622
Score = 102 bits (112), Expect = 7e-17
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || |||||||| || || || || |||||| | || || || ||||
Sbjct 373095 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA---GTCC 373039
Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| | |||| | || || | || ||||||||| || | || || ||
Sbjct 373038 AGTGACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGAT 372979
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|| |||||||| || |||||||| || ||||||||||| | || | ||||| ||
Sbjct 372978 CAACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTAC 372919
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|||||||| || || || |||||||| || || || ||||
Sbjct 372918 AACATTCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 372878
>seq473
Length=608281
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 372931 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 372872
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 372871 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 372812
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||||| || || || |||||||| ||| | || || | | | || ||||||| ||
Sbjct 372811 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 372753
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || ||||| ||
Sbjct 372752 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 372717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445759016994000
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