Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515
.1_202016-08-10] 1,325 sequences; 51,394,345 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1216 179 5e-40
>seq1216
Length=971295
Score = 179 bits (198), Expect = 5e-40
Identities = 573/881 (65%), Gaps = 12/881 (1%)
Strand=Plus/Plus
Query 65816 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 65875
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 776506 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 776565
Query 65876 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 65934
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 776566 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 776624
Query 65935 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 65991
| || ||| | ||| | ||| ||||| | |||| |||||||| |
Sbjct 776625 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 776681
Query 65992 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 66051
|||| | | | | | ||||| || || | || ||||||| || ||| || ||||
Sbjct 776682 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 776741
Query 66052 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGG 66111
| | || || ||||| || |||||||| |||||||| || | || | || | ||
Sbjct 776742 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 776801
Query 66112 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAAT 66171
| ||||| || || ||||| ||||| |||||| | | | |||| | |
Sbjct 776802 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 776861
Query 66172 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 66231
|||| || || | ||| ||||| | | | || || || ||||| || ||||| || | |
Sbjct 776862 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 776921
Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 66291
| | ||| ||||| || | || | | ||| |||| || ||| || |||||||| ||||
Sbjct 776922 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 776981
Query 66292 TCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 66349
| |||| ||| ||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 776982 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACC 777039
Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 777040 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 777099
Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469
||| |||| | || | || || |||| |||| | || || || || || ||
Sbjct 777100 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 777159
Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529
| || ||||| || || || || |||| || | || ||||| ||||| | |
Sbjct 777160 GAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 777219
Query 66530 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589
| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 777220 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 777279
Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649
|| || ||||| || || || | | ||| ||| |||||||| || || |||||
Sbjct 777280 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 777339
Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690
|| | |||| || || || || || | ||| | ||||
Sbjct 777340 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 777380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658161899013000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |