Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq685 82.4 8e-11 >seq685 Length=386754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| |||||||| || || |||||||| ||| | || | ||||||||||| Sbjct 373348 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTG 373407 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || |||||| ||||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 373408 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 373467 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | || | | || | || || | | || || |||| ||| | |||||||| || Sbjct 373468 TGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 373527 Query 143161 CAATGTTTTTACGAATAT 143178 | || || |||| ||| Sbjct 373528 GAGGGTCTTGACGACTAT 373545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006002574000