Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq909 246 4e-60 seq1216 145 1e-29 >seq909 Length=86681 Score = 246 bits (272), Expect = 4e-60 Identities = 567/843 (67%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | ||||| Sbjct 36259 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 36318 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || | || ||| | | || |||||| ||||| || | || Sbjct 36319 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 36378 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | || || || || | ||| ||||| || |||||||| || || || || || Sbjct 36379 CACATCCTTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAG-CG 36437 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| |||| ||||| ||||| ||||||| Sbjct 36438 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 36496 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || ||||||| ||||| || || | Sbjct 36497 TGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCG 36556 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||||||||| || || || | || | || || || ||||| Sbjct 36557 CCCAGCGAACCTAC-CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCC 36615 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 36616 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCATTTGCCCAGCGTCTCGTTGCT 36675 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| ||| || || | ||||| ||||||||| Sbjct 36676 TTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAG 36735 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | |||||| | || ||||| || ||||| Sbjct 36736 AAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 36795 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | | || | | || Sbjct 36796 CTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 36846 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 ||| | | | | || | || | || |||||||| | ||| || || ||||| || Sbjct 36847 AGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTC 36906 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 || || | || || | | | |||||||||| | || ||| ||||||| Sbjct 36907 ACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATT 36966 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCC 125792 ||||| || || |||||||| || || | ||||| || ||| ||||||| ||| Sbjct 36967 GAGTTCGTCGCTGATCGTCTCCTTGTCG---CGCTTGGCAACGAGAAGGTTTACAAGGCC 37023 Query 125793 AAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | || ||||| || |||||| | ||| || || | || ||||||||||| |||||| Sbjct 37024 ACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAG 37083 Query 125853 AAG 125855 ||| Sbjct 37084 AAG 37086 >seq1216 Length=971295 Score = 145 bits (160), Expect = 1e-29 Identities = 303/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 776913 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 776854 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 776853 GTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 776794 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || ||| | || ||| | ||||||||||| || | | ||| || Sbjct 776793 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGAC 776734 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || || || |||| |||| || || ||||| Sbjct 776733 TGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAGTTC 776674 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| | |||||| | || |||| | || | || | Sbjct 776673 GAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCA 776615 Query 97175 AGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| |||| Sbjct 776614 GAAACTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATGCTCT 776556 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| || || ||||| ||||||||| || | || |||||| |||||| Sbjct 776555 ACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTCCA 776496 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | |||||||| |||||| | |||||| Sbjct 776495 ACCTGTGCACTGAAATTATTGAGTAC 776470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046926207000