Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1216 190 2e-43 seq909 187 3e-42 seq236 86.0 7e-12 >seq1216 Length=971295 Score = 190 bits (210), Expect = 2e-43 Identities = 1166/1843 (63%), Gaps = 45/1843 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 775521 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGAC 775580 Query 113625 CCTGCTTCCAGGCATACATA-TGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 113683 | |||||||| | | || | ||||| || | |||| | || || || |||| Sbjct 775581 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATG 775639 Query 113684 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATC 113743 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 775640 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 775699 Query 113744 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 113803 || | | ||| ||||| || || | || || ||| | ||| | ||||| Sbjct 775700 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 775759 Query 113804 TCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 113863 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 775760 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 775819 Query 113864 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 113923 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 775820 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 775879 Query 113924 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 113983 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 775880 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 775939 Query 113984 AAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 114043 | || |||| ||| ||| || ||||| || || | ||| || |||||||||| || Sbjct 775940 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 775999 Query 114044 TTTTCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101 | | | | | | | | || || | | |||||||| || | | || | | Sbjct 776000 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 776057 Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||||||||||| | ||||| || || || | || || ||| | Sbjct 776058 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGG 776117 Query 114162 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 | ||||| ||| |||| | ||||| || |||||| ||||| || || |||| Sbjct 776118 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 776174 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 | || || | || | | |||||| || || || | | || || | | Sbjct 776175 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCA 776233 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 776234 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 776293 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 776294 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATA 776353 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 114454 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 776354 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 776410 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 | | || || || | || || || || || |||| | ||| || || | Sbjct 776411 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 776470 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 ||||| |||||||| || |||| || || || ||||| || | ||||||||| || Sbjct 776471 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 776530 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 776531 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 776590 Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTCC 114691 | ||||| || | ||| | || | | || | | || | ||| || | |||||| Sbjct 776591 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG-CCCTCC 776647 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 | |||||||||| ||| || || || ||||| || || | || | ||| || || Sbjct 776648 TTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 776707 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | ||||| | || | ||| | || || ||||||||||||||||| || Sbjct 776708 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGA 776767 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || |||||||| || || ||| || || || || | || || | || || || Sbjct 776768 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 776827 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 ||| | || | || || | || ||| | |||||| || || ||||| | || | Sbjct 776828 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 776887 Query 114932 G-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | || | ||| | | ||| |||||| ||||| | || ||| || || || Sbjct 776888 GCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 776944 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTAT 115043 |||||||| |||| | ||| | ||| || || || || ||| || ||| | | Sbjct 776945 CGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCC--AG 777002 Query 115044 TGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 115103 | || | || | || | || || ||||||||| || ||| ||| ||||| || | Sbjct 777003 TAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCAC 777062 Query 115104 ACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC 115163 | | ||||| | ||||||| || || || ||| |||| | | | | ||||| Sbjct 777063 AGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGC 777122 Query 115164 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 | |||| ||| ||| || || || ||||||||||| || || | || || ||| Sbjct 777123 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGA 777182 Query 115224 ACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGT 115280 | | | || ||||||| | ||| ||||||||||| || | || || || || Sbjct 777183 AGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCC 777239 Query 115281 GAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 115340 |||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 777240 AAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAA 777299 Query 115341 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | ||||||| |||||| ||||||| ||||| || Sbjct 777300 TCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 777342 >seq909 Length=86681 Score = 187 bits (206), Expect = 3e-42 Identities = 539/818 (66%), Gaps = 25/818 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 37101 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 37042 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 125872 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 37041 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 36987 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 36986 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 36927 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 ||| || || || || || |||| ||| |||||| ||||| || | ||| Sbjct 36926 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 36867 Query 125993 GCGTGAATGGTGTCCACCC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 | || || | | | | || | | ||| | || | || ||| || |||| Sbjct 36866 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 36810 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| |||||||| ||||| |||||||| || || |||||| ||| || ||| Sbjct 36809 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 36750 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 36749 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 36690 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCA 126228 || ||| ||||| |||| |||||||| ||||| ||| | | | || | | | ||| Sbjct 36689 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAATGAG-GAGTCCTTATCCTGGATCCA 36631 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 || ||||| | ||||| || ||| || |||| ||||| || || | |||||| Sbjct 36630 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAG 36571 Query 126289 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 126348 | | | | || || |||||||| | || ||||| || || || ||| Sbjct 36570 GTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGA 36511 Query 126349 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 126407 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 36510 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGA 36452 Query 126408 CCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 |||| | | ||| | | || ||||| ||||| ||||| || |||| ||| Sbjct 36451 CCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAA 36393 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCG 126523 || || ||||| | | ||| ||| |||| | ||| || | |||||||| Sbjct 36392 AAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCA 36333 Query 126524 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | |||||||| || ||||| | |||||| |||||||| Sbjct 36332 TGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 36295 >seq236 Length=480493 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000 |||| ||||| || ||||| ||||||||||| | | ||| | ||||| | || Sbjct 81102 CCACTGGGTTCCAGACAGTTGATGTTGTTTGAACCGACGAAGTTCTGGGCCAG---GCCA 81046 Query 172001 ATCGTA-TCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCGACATAC 172057 || || || | | |||||| ||||||||||||||||| | || || | |||||| Sbjct 81045 ATGATAGTCTGTTGGAGAGACTGTTCACCGTGATGGTAGGCAGTCTGCTCAGAGACATAA 80986 Query 172058 GCCGCCAACTGTGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCACGCATAC 172114 | ||||| | | |||| ||| ||| ||| ||||| | | |||||| ||||| Sbjct 80985 CCAGCCAATTCAACGACCT---TCTTATCTTTGACCAGGTTTCTCTTGAAGCAGGCATAT 80929 Query 172115 ATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 172168 |||||||| | ||| |||||||| ||| || || | || |||||| ||| Sbjct 80928 ATGACCTTACGCTGACCAGGCTTGAAGCCATCCAGCACGGACGGGATGGATCGC 80875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597343706331000