Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq909 192 6e-44 seq473 122 9e-23 seq982 114 1e-20 seq685 113 5e-20 >seq909 Length=86681 Score = 192 bits (212), Expect = 6e-44 Identities = 377/553 (68%), Gaps = 11/553 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| |||||||| || | ||||| || | || ||||| |||||| ||| |||| Sbjct 36816 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 36757 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || || | |||||| || ||||| Sbjct 36756 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 36697 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC--TTTGCTG 133071 || ||||| || || |||||||| || || |||| | | || | || || | | ||| Sbjct 36696 GATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAATGAGGAGTCCTTATCCTG 36637 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 |||||| || | ||||| |||||||| | | || ||| || || || || |||||| Sbjct 36636 --GATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCG 36579 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAAT 133189 || | | | | || ||| || || | | ||||||||| ||||| || | Sbjct 36578 TT--AAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGT 36521 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | || ||||| | ||||||||| ||| || |||||||| ||||| || |||||| Sbjct 36520 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 36461 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||| || || | ||| |||||||| || || |||||||| || || || || Sbjct 36460 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGG 36401 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CT 133366 | |||||||| || || | ||| || ||| |||| | | | ||| ||| | Sbjct 36400 CAGCGAAAAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGT 36341 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| | |||||||| || || | |||||| | ||||| || || ||||| | Sbjct 36340 TCCAGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 36281 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 36280 CCTTCTTGTACAT 36268 >seq473 Length=608281 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 372931 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 372872 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| | || Sbjct 372871 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 372813 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 372812 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 372753 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 372752 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 372714 >seq982 Length=971993 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 926215 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 926274 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 926275 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 926334 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 926335 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 926394 Query 38433 G 38433 | Sbjct 926395 G 926395 >seq685 Length=386754 Score = 113 bits (124), Expect = 5e-20 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || |||||| | || Sbjct 373323 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 373264 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| ||||| |||| | Sbjct 373263 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 373206 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| || || || || | || || || |||||||| Sbjct 373205 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACA 373146 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || |||||| | || || || ||||| || ||| Sbjct 373145 ACATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 373108 Score = 104 bits (114), Expect = 2e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || |||||| ||| Sbjct 373095 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 373036 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| |||||| | || | Sbjct 373035 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATC 372978 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| || || ||| |||| || | |||||| | | |||||||| Sbjct 372977 AACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTACA 372918 Query 38422 ACATCCAAAAGGA 38434 |||| || ||||| Sbjct 372917 ACATTCAGAAGGA 372905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| ||||| |||||||| | || |||||| | |||| | | Sbjct 373545 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 373486 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | |||| ||| || | ||||| ||||| || || | ||||| ||||| Sbjct 373485 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 373426 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || || || || || || || | || ||||| |||||||||||| || Sbjct 373425 CTGATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAG 373366 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| | || || ||| | || || || Sbjct 373365 AAGGAATCTACCCTTCATCTCGTCCTCCG 373337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164515888000