Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq510 239 6e-58 seq477 93.3 5e-14 seq1093 86.0 8e-12 >seq510 Length=474775 Score = 239 bits (264), Expect = 6e-58 Identities = 431/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 13285 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 13226 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 13225 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 13166 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 13165 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 13106 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || ||||| || Sbjct 13105 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 13046 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| ||||| Sbjct 13045 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 12986 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| | || ||||| || | | Sbjct 12985 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 12926 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || ||||| || || |||| ||| || | | | Sbjct 12925 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 12869 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | | | ||||| ||| | || |||| | || | ||||| | Sbjct 12868 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGAACCTCAGGATCGGCGAACTTGCGA 12809 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || || ||||| | |||||||||||| ||||||||| Sbjct 12808 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 12749 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 12748 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAATCCGACGAATGAGGGGGTAGTT 12692 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 12691 CGGTTACCCTGGTCGTTGGCGATGATATC 12663 >seq477 Length=680660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 583437 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 583496 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 583497 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 583553 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 583554 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 583612 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 583613 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 583672 Query 7695 GTTG 7698 | || Sbjct 583673 GCTG 583676 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 583737 CGTTGAAGTAGGCAGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 583796 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| | Sbjct 583797 CGGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 583856 Query 7824 TC 7825 || Sbjct 583857 TC 583858 >seq1093 Length=213235 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGA 22549 ||||||||| || | || | || ||||| |||||||||| || | || ||| Sbjct 47361 CTCCACAAACAGAGGAGACCTCCTTCCACCCGGTATCACCATATGCTGTTACCAAGTTGT 47302 Query 22550 TGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTA 22609 | ||| ||| | || || |||| | |||| ||||||| | ||| | ||||||| Sbjct 47301 TCCAATACTGGACTACTGTCAATTTTCGAGAGGCATACGGCTTCCATGCCTCGAATGGTA 47242 Query 22610 TAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAAC-A 22668 | | |||||||| |||||||||||||||||| | ||||| || ||||| || || | Sbjct 47241 TTCTCTTCAACCATGAATCACCGAGACGGGGTACCACTTTCGTCACCCGAAAGATCACTA 47182 Query 22669 CTC-GGTGTCGCTAATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGA 22727 ||| || | |||| | ||| || || | | | || | ||| || || || || Sbjct 47181 CTCAAGTAGCTTTAAT-TGCCTGC-GGAAAGTTAGACTTCTTCTCCCTAGGAAATCTGGA 47124 Query 22728 TGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAA 22767 || ||||||||||| |||||| |||||| || || Sbjct 47123 CGCTGTTCGAGATTGGGGCCATGCAAAAGATTACATGCAA 47084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122280613000