Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1216 246 4e-60 seq384 104 3e-17 seq909 82.4 9e-11 >seq1216 Length=971295 Score = 246 bits (272), Expect = 4e-60 Identities = 1084/1692 (64%), Gaps = 59/1692 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||||||| |||||| || | || | ||||| | Sbjct 775553 CGAAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 775611 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || | ||| | ||||| ||||| |||||||| ||||| Sbjct 775612 GATCTTGCCCATCGTGGGGTCTTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAA 775671 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | | || ||| ||| | | ||||| || | Sbjct 775672 GGCACCTCGATCAGCAGCCATCTGAACGA----CTTGGCGCTGAGAGATCTCCCAAACGG 775727 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 |||| |||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 775728 TCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 775787 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 775788 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 775841 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || ||||| |||||| Sbjct 775842 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGA 775901 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 |||| | |||||||| ||||| ||||| |||||||| || || || | || || | Sbjct 775902 TGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAG 775961 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || | Sbjct 775962 TAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 776021 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | || | || | | |||||| || || | Sbjct 776022 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCGAACTGGA 776075 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||| ||||| | ||| | ||||| ||| |||| Sbjct 776076 GGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 776135 Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 || | | | || | | || || || || || || ||||| || || || || || Sbjct 776136 GCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGC---TTGTTG 776191 Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111 || |||| ||| | |||||||| | | || || || || |||| || || Sbjct 776192 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATCGGCAAG 776250 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 776251 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 776310 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||| ||||||| | || || || | ||| || ||| | Sbjct 776311 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 776370 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAA 110290 || | || | | | ||| | | | || | || |||| | ||| ||||| | Sbjct 776371 GTGCAACTTCTTGAAGTCGTA-GCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 776429 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| |||||| | | ||| || | |||||| || | Sbjct 776430 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGC 776489 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 ||| |||||| || ||| ||| | |||||| || || ||| |||||| |||| Sbjct 776490 ACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCAT 776549 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 776550 CCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA 776609 Query 110471 CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAA 110528 | || || ||| |||| | | || |||| ||||||||| ||||| Sbjct 776610 GTTTCTGAGCCTTGATAGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAG 776667 Query 110529 GTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAG 110588 |||| || |||| |||||| || | || || || || ||| || | || Sbjct 776668 AGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAG 776727 Query 110589 GGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGA 110648 | ||| | || || ||||| | ||||||||| || ||||| ||||| | || Sbjct 776728 CGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAG 776787 Query 110649 GAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 ||||||||||||| ||| |||| || | ||| ||||| || || || | || || Sbjct 776788 GAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTC 776847 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAG------ACAGCGATGGATCCCTTACGACG 110762 | || ||| |||||||| || ||||| ||| | ||| || || ||| | | Sbjct 776848 GAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT--GTTG 776905 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 || |||||| |||||||| || ||| |||||||| | |||||||||| || || Sbjct 776906 -CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACC 776964 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| ||| || ||||| || ||| | | ||||| || ||| | | Sbjct 776965 GTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTT 777024 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAA 110941 || |||||||||||| ||| ||| || ||||| ||| |||| ||| | || | Sbjct 777025 CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTAGA 777083 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 | || ||||| || |||| | ||| | |||||||| |||| || || ||| Sbjct 777084 TTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 777143 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTT 111059 | || || || |||||||| || || | ||||| ||| ||| ||| ||||||| Sbjct 777144 GGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGA--AGAATTTGCTGGACATCAG 777201 Query 111060 GTTGTATGTGTC 111071 ||||||||| || Sbjct 777202 GTTGTATGTCTC 777213 >seq384 Length=536174 Score = 104 bits (114), Expect = 3e-17 Identities = 250/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 482960 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 483018 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | || |||| | | | | | || |||||||||||||| ||||| | Sbjct 483019 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 483078 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| | || | Sbjct 483079 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 483138 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 483139 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 483196 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || |||| || || | |||||||| |||||||| | |||||| | | Sbjct 483197 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 483256 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 483257 AGCACCTCGAGGGATCTTGGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 483313 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 483314 GCTCACAAACTCC 483326 >seq909 Length=86681 Score = 82.4 bits (90), Expect = 9e-11 Identities = 205/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 36813 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 36754 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 36753 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 36694 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| |||||||| | ||||||| || ||| | ||| ||| || || Sbjct 36693 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAATGAGGAGTCCTTATCCTGGA 36635 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728 ||| || ||||||| |||||| | || |||||||||| || | ||||| || Sbjct 36634 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 36576 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 36575 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 36517 Query 119789 CTC 119791 ||| Sbjct 36516 CTC 36514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966245085000