Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1216 179 1e-39 seq909 154 4e-32 seq476 107 6e-18 seq817 93.3 1e-13 >seq1216 Length=971295 Score = 179 bits (198), Expect = 1e-39 Identities = 573/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 776470 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 776529 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 776530 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 776589 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 776590 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 776649 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 776650 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 776707 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| | |||||| | ||||| ||| || | || ||||||| ||| || | Sbjct 776708 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT--CTTTTCAACACGCTTCATGAAAA 776765 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||||||||| | || |||||| | ||||| | Sbjct 776766 GATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 776825 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||||| || ||||| || || || |||| Sbjct 776826 TCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 776885 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| |||||||| || ||||| |||||||| || |||||||||| Sbjct 776886 AAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 776945 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || ||| || || || || ||||| ||| || | || |||| | Sbjct 776946 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 777005 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 || | | || | | || ||||||||||| | |||| || || || || || Sbjct 777006 CACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAG 777064 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280 ||| | ||||| | | || || |||||| || || | ||| | | ||| |||| Sbjct 777065 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 777123 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||||| || | || || || |||||||| || || || | ||||| | || Sbjct 777124 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 777183 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 | || | ||||| | |||||||||| | ||| | || | || ||| Sbjct 777184 GAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAAT 777243 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 777244 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 777303 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 777304 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 777342 >seq909 Length=86681 Score = 154 bits (170), Expect = 4e-32 Identities = 467/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Plus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || ||||| ||||| |||||||||||| || || | | || || | || Sbjct 36388 GCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 36447 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || || | |||| || ||| ||| || || | ||||| |||||| || ||| Sbjct 36448 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 36507 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || || || || || || ||||| || |||||||| || ||| |||| | Sbjct 36508 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 36567 Query 133412 AAACTATTCAACGCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | || || ||||||||| | || ||| || || |||||| | |||||||| || Sbjct 36568 TACCTCTTTAACGCCATT-GAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 36626 Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||||||| ||| | ||||| |||||||||||||| |||| || Sbjct 36627 CCGATGGATCCAGGATAAGGACTCCTCATTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGT 36686 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 ||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| | Sbjct 36687 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 36746 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || ||| || || ||||| || || || | || |||| |||||||| || Sbjct 36747 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 36806 Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGA 133710 |||||| | || |||||| | | || | | || ||| | | ||| | || Sbjct 36807 CTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGA 36866 Query 133711 AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGC 133768 || |||| || || || |||||| || || ||| | ||||| || |||| Sbjct 36867 TATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGC 36926 Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828 | || | || ||||| || || ||| ||| || ||||| || || ||||| | Sbjct 36927 CCTT--CTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGT 36984 Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATG 133888 | || | | || || ||| ||||| || |||| || ||||||| ||| Sbjct 36985 CTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATG 37044 Query 133889 GAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 |||| ||| | ||| ||||| || ||||||||| | | || ||||| ||| Sbjct 37045 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 37101 >seq476 Length=553967 Score = 107 bits (118), Expect = 6e-18 Identities = 391/600 (65%), Gaps = 38/600 (6%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 402289 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 402230 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | |||||||||||||| |||||||| ||||| Sbjct 402229 TCCTTCAGGAAAGCAGCGGCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 402170 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | | Sbjct 402169 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 402112 Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||| | ||||| || ||| || | ||||| || |||||||||||| Sbjct 402111 GACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 402056 Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696 | | || |||| ||| | || || | || || | |||||| || |||| || Sbjct 402055 TAGGTAGGTCCGAAGAACACCTGAGCACGGA-GCTTTCG---TCCAGTGTGACCGTTGTA 402000 Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755 ||| || ||| || ||||| ||||| | ||| ||| |||| | || Sbjct 401999 CATGACCTCGAAACCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 401945 Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809 |||| || | || | | || ||| |||| || | | ||| | | Sbjct 401944 GAATC--GACTGTGACATCAGTGAACGGTGTGGCGTCACCCTCCATACCTTCCAGCGTTG 401887 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | || |||| | ||| ||| ||| ||||| || ||||| || ||||| || | Sbjct 401886 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGATGGAATGGCGT 401827 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | || ||||| ||||| ||||| | || || || |||| |||||||||| | | Sbjct 401826 GAGGGTTGATAATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 401768 Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||| || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 401767 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 401709 >seq817 Length=974042 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 267857 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 267801 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 267800 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 267741 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 267740 ACACCAACCATTTCACCAGG 267721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471792613596525