Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515
.1_202016-08-10] 1,325 sequences; 51,394,345 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq473 89.7 4e-13
>seq473
Length=608281
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || || ||| ||| || || || || || ||| || || ||| | || ||
Sbjct 372720 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 372779
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| |
Sbjct 372780 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 372839
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || |||| ||| | | | || ||| |||||||| || | ||||| | ||
Sbjct 372840 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 372898
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
||||| || || || || || || ||||||||
Sbjct 372899 CCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 372931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429538663509725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |