Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515 .1_202016-08-10] 1,325 sequences; 51,394,345 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq473 156 1e-32 seq685 147 5e-30 seq982 145 2e-29 >seq473 Length=608281 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 372925 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 372866 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 372865 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 372806 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| |||||| | || || ||| || ||| || Sbjct 372805 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTACAACATC 372746 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 372745 CAGAAGGAGTCCACCCTCCACCTGGT 372720 >seq685 Length=386754 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || ||||| || ||||| || || || ||||||| Sbjct 373541 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCG 373482 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || ||||||||||||||| || || |||||||| |||||||| || || | Sbjct 373481 ACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGA 373422 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || ||||| || ||||||||||| | || |||||||| || ||| | || || | Sbjct 373421 TCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGG 373362 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || ||||| || Sbjct 373361 AATCTACCCTTCATCTCGT 373343 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||||||||||| || || ||| Sbjct 373830 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 373771 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 373770 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAA 373711 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || || | ||||| | ||||| ||| | Sbjct 373710 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 373651 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 373650 CAGAAGGAGTCCACTCTTCACCTTGTT 373624 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 373092 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGTGAC 373033 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || || || || || || || Sbjct 373032 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAACAG 372973 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||| | |||||||| | || | ||| || ||| | Sbjct 372972 CGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTACAACATT 372913 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || ||||| || || || ||| | |||| Sbjct 372912 CAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 372878 >seq982 Length=971993 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 926214 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 926273 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 926274 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 926333 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| || Sbjct 926334 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 926393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203710764782050