Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702515
.1_202016-08-10] 1,325 sequences; 51,394,345 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq473 156 1e-32
seq685 147 5e-30
seq982 145 2e-29
>seq473
Length=608281
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 372925 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 372866
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 372865 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 372806
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| |||||| | || || ||| || ||| ||
Sbjct 372805 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTACAACATC 372746
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 372745 CAGAAGGAGTCCACCCTCCACCTGGT 372720
>seq685
Length=386754
Score = 147 bits (162), Expect = 5e-30
Identities = 152/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||| || ||||| || || || |||||||
Sbjct 373541 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCG 373482
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || || || ||||||||||||||| || || |||||||| |||||||| || || |
Sbjct 373481 ACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGA 373422
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || ||||| || ||||||||||| | || |||||||| || ||| | || || |
Sbjct 373421 TCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGG 373362
Query 178111 AATCAACACTGCATCTTGT 178129
|||| || || ||||| ||
Sbjct 373361 AATCTACCCTTCATCTCGT 373343
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || |||||||||||||| || || |||
Sbjct 373830 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 373771
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || ||||| || |||||||||
Sbjct 373770 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAA 373711
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| || ||||| || || || | ||||| | ||||| ||| |
Sbjct 373710 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 373651
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || || ||||||
Sbjct 373650 CAGAAGGAGTCCACTCTTCACCTTGTT 373624
Score = 127 bits (140), Expect = 5e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| ||||| |||||||| ||||| || |||||||| ||||| || | |||
Sbjct 373092 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGTGAC 373033
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || || || || || || || ||
Sbjct 373032 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAACAG 372973
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||| | |||||||| | || | ||| || ||| |
Sbjct 372972 CGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTACAACATT 372913
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || ||||| || || || ||| | ||||
Sbjct 372912 CAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 372878
>seq982
Length=971993
Score = 145 bits (160), Expect = 2e-29
Identities = 140/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || ||| ||||||||
Sbjct 926214 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 926273
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || |||||||| || |||||
Sbjct 926274 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 926333
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| ||
Sbjct 926334 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 926393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203710764782050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |