Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq380 185 1e-41 >seq380 Length=2124523 Score = 185 bits (204), Expect = 1e-41 Identities = 572/880 (65%), Gaps = 10/880 (1%) Strand=Plus/Plus Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844 |||||| || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 1305526 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1305585 Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904 ||| | || || ||| |||||| || | ||| || | ||| | ||||||| || Sbjct 1305586 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGAT 1305645 Query 53905 TATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCAAACTCGTC 53961 || ||| | ||| | ||| ||||| | |||| || ||||| || Sbjct 1305646 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC 1305702 Query 53962 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021 ||| | | | | | ||||| || || | || ||||||| || ||| || |||| Sbjct 1305703 TCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT 1305762 Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 54081 | | || || ||||| || |||||||| |||||||| || | || || || | || Sbjct 1305763 CTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGC 1305822 Query 54082 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 54141 | ||||| || || ||||| ||||| |||||| | | | |||||| || Sbjct 1305823 ACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTG 1305882 Query 54142 CCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 54201 ||| || || | ||| |||| | | | || || || ||||| || ||||| || | || Sbjct 1305883 CCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATA 1305942 Query 54202 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 54261 | ||| ||||| || | || | | ||| |||| || ||| || |||| ||| ||||| Sbjct 1305943 GCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGT 1306002 Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCT 54319 |||| ||||||| ||| | ||||| ||| | | || | |||| || || || Sbjct 1306003 ACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACCA 1306060 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 ||||| || ||||| | || || || | ||||| ||||| ||||| ||||| || Sbjct 1306061 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 1306120 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 ||| |||| | || | || || |||| |||| | || || || || || || Sbjct 1306121 TCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAG 1306180 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 | || ||||| || || || || |||| || | || ||||| ||||| | || Sbjct 1306181 AGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACT 1306240 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 1306241 CGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGC 1306300 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 || || ||||| || || || || | ||| ||| |||||||| || || ||||| Sbjct 1306301 TCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAG 1306360 Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || | |||| || || || || || | ||| | |||| Sbjct 1306361 TATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1306400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692908403680